Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0822 ATGGCCTCCTCCATTTCTGCAGTGATAGTAATGTGGGTGGTTGCAATGGCCGCGGCAGCAGCAGCATCATCACAGACATGGATTGAGGGTGAGGCTCTGCGCAGGAGCACTTGGTGGCGGTCTTACAACACTACTACAGGCCATTGTAATTGGCCAGGCATAAGCTGTAATGCGGGGGGAAGTGTCACTGAGATTTGGGCGGTTCCAACTCAAGAAAATGGGCTGCTTACCCAATTTAACTTCTCTTCATTTCCAAATCTGGTTCGACTAAATTTTAGCTCTCTTGGCCTGAATGGTGACATCCCACATCAAATAGGTACTCTCACAAAACTCACCCACCTTGATCTTTCTCACAACTTTCTTTCTGGTGAGCTGCCTCTTTCGCTGACTAACCTCACCAAGTTAGTGGAACTCAATCTTGGTTATAATCACATATCTGGCCAAATCCCAAGTGAAATTGGGAATCTGAGAAATTTGGTTGGCCTAGTCTTAGATTGTAACTATCTCAATGGTGTTATTCCTTCGTCTTTAGGCCAGTTAACCCGCTTAACTTCTCTCTACATTGGTTGGAACCAAATGGAGGGTTCAATCCCTCCTGAAATTTGGAGTTTAAAGAGCTTAGTTGATATTTACTTTGATCATAACATTCTCACTGGTGTCATTCCCTCATCCGTGGGCAATCTGACTAATTTGACTTCTCTCCACCTTGCTTCGAATCAAATCACGGGGTCGATCCCTTCTGAAATTGGGAGTTTAAAGAAGTTAGTTGATTTGGCCTTAGATAATAATAAACTCGTTGGTGTGATCCCCAAGGAACTGGGTAATTGCCACAGCTTGCGTTATTTGTCTATGAAATTCAATCGTTTGAATGGGAGCATTCCTTCGGAGATCGGTGGCCTGGTTGCACTACGAAAACTTGATTTGAGTGTCAATAATATTAGTGGGACCATACCCCTCCAGTTCCAAAACTTCAACAGCTTAGAGTATTTGGATCTCTCTTACAATTATTTGGAGGGTTATGTACCCTTCGAACTGCATCTTCCATCTCTATTTCGAGCATTCGAACACAATAAAGGTTTGTGTGGTGACACCAAATTTGGCATTCCACCTTGCAGAAAAAGGAACAGAATCACAATCATCATCATTGTGGTCATTTGTTTATGCTCCGCCTTGCTGATTTCGTCTATAATTTTTGGAGTTCTATTAATTTGGAGGCGGAAGACGAGAAAACTTCAACCTGAGGAAGCAACTACCACACAAAATGGAGACATATTTTCAATATGGGATTATGATGGTAAGATTGCTTACGAAGACATCATTGAGGCGACGGAGGATTTCGACATCAAATATTGCATTGGGACTGGAGGTTATGGCAGTGTCTATAGAGCGAAATTGACCAATGGGAAAGAGGTTGCCTTGAAAAAACTTCACACCTTGGAAAGTCAGAACCCAACTTACATGAAAAGTTTTACAAATGAGGTGCGGGTGTTGTCAAAAATCCGACATCGAAATATCGTAAAACTATATGGCTTTTGTCTACACAAAAGATGCATGTTTCTAGTTTATGAGTACATGGAAAGAGGAAGCCTGCATTGTGTCTTGAGTGATGAAATTGAGGCTTTGGAGTTTGATTGGATTAAGAGGGTGAATGTTGTTAAAAGCATTGCTAATGCCTTGTCCTACATGCATAATGACTGTATCCCTCCTCTGCTTCATAGAGACATATCAAGCGGTAATATTCTCTTAGATTCAGAATTCAGGGCCGTTGTATCTGATTTTGGAACAGCTAGATTGCTTGATCCTGATTCATCAAATCAAACCCTTCTTGCTGGCACTTATGGTTATGTTGCACCAGAACTTGCTTACACTATGGTTGTTACGGAAAAATGTGATGTATATAGCTTTGGGGTACTTACATTGGAGATAATGATGGGAAAGCATCCGAGAGAACTTGTCACTATCTTATCAACCTCTTCATCTCAAAATATAATGTTGGTGGATATATTAGATCCTCGTCTTGCACCCCATATTGATCCAGAAGTTATTGATAATGTGGTTCTCATCATAAGGTTGGCACTCAAATGCATCAATTTGAATCCGACATCCCGTCCAACAATGCAACATGTGTGCAAGGAATTTGAGACTTGCACCCCATTTCCTATACCCTTCCATGCTATTTCACTTGGGCAATCGAAAGATCAAGAAGTATGA 2211 0.4143 MASSISAVIVMWVVAMAAAAAASSQTWIEGEALRRSTWWRSYNTTTGHCNWPGISCNAGGSVTEIWAVPTQENGLLTQFNFSSFPNLVRLNFSSLGLNGDIPHQIGTLTKLTHLDLSHNFLSGELPLSLTNLTKLVELNLGYNHISGQIPSEIGNLRNLVGLVLDCNYLNGVIPSSLGQLTRLTSLYIGWNQMEGSIPPEIWSLKSLVDIYFDHNILTGVIPSSVGNLTNLTSLHLASNQITGSIPSEIGSLKKLVDLALDNNKLVGVIPKELGNCHSLRYLSMKFNRLNGSIPSEIGGLVALRKLDLSVNNISGTIPLQFQNFNSLEYLDLSYNYLEGYVPFELHLPSLFRAFEHNKGLCGDTKFGIPPCRKRNRITIIIIVVICLCSALLISSIIFGVLLIWRRKTRKLQPEEATTTQNGDIFSIWDYDGKIAYEDIIEATEDFDIKYCIGTGGYGSVYRAKLTNGKEVALKKLHTLESQNPTYMKSFTNEVRVLSKIRHRNIVKLYGFCLHKRCMFLVYEYMERGSLHCVLSDEIEALEFDWIKRVNVVKSIANALSYMHNDCIPPLLHRDISSGNILLDSEFRAVVSDFGTARLLDPDSSNQTLLAGTYGYVAPELAYTMVVTEKCDVYSFGVLTLEIMMGKHPRELVTILSTSSSQNIMLVDILDPRLAPHIDPEVIDNVVLIIRLALKCINLNPTSRPTMQHVCKEFETCTPFPIPFHAISLGQSKDQEV* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0822 736 Gene3D Ribonuclease Inhibitor 246 366 IPR032675 -
Vvi4g0822 736 FunFam Leucine-rich repeat receptor protein kinase MSP1 408 524 - -
Vvi4g0822 736 SUPERFAMILY Protein kinase-like (PK-like) 427 713 IPR011009 -
Vvi4g0822 736 Gene3D Phosphorylase Kinase; domain 1 407 524 - -
Vvi4g0822 736 FunFam Leucine-rich repeat receptor protein kinase EMS1 269 358 - -
Vvi4g0822 736 ProSitePatterns Tyrosine protein kinases specific active-site signature. 570 582 IPR008266 GO:0004672|GO:0006468
Vvi4g0822 736 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Vvi4g0822 736 ProSiteProfiles Protein kinase domain profile. 446 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0822 736 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
Vvi4g0822 736 SUPERFAMILY L domain-like 26 386 - -
Vvi4g0822 736 FunFam MDIS1-interacting receptor like kinase 2 525 718 - -
Vvi4g0822 736 Pfam Protein kinase domain 450 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0822 736 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 174 267 - -
Vvi4g0822 736 Pfam Leucine rich repeat 134 192 IPR001611 GO:0005515
Vvi4g0822 736 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Vvi4g0822 736 Gene3D Transferase(Phosphotransferase) domain 1 525 718 - -
Vvi4g0822 736 Gene3D Ribonuclease Inhibitor 155 245 IPR032675 -
Vvi4g0822 736 SMART LRR_typ_2 180 204 IPR003591 -
Vvi4g0822 736 SMART LRR_typ_2 300 323 IPR003591 -
Vvi4g0822 736 SMART LRR_typ_2 132 156 IPR003591 -
Vvi4g0822 736 SMART LRR_typ_2 108 131 IPR003591 -
Vvi4g0822 736 SMART LRR_typ_2 228 252 IPR003591 -
Vvi4g0822 736 FunFam Nuclear pore complex protein NUP107 21 171 - -
Vvi4g0822 736 Pfam Leucine Rich repeat 228 243 IPR001611 GO:0005515
Vvi4g0822 736 Gene3D Ribonuclease Inhibitor 28 154 IPR032675 -
Vvi4g0822 736 PANTHER LEUCINE RICH REPEAT KINASE 2 190 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0822 Vvi-Chr4 10548897 10552163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0822 87 644 Receptor kinase-like Gene Family AT4G08850 40.941 1.23e-128 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0822 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0822 - - vvi:100261564 1439.09