Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0819 ATGTTGTATTTCTTGCTATCTTCAGGACAGCCGAAACGACATCTTCTTACAACAGGATGGAGTGTGTTTGTCAGTGCCAAAAGACTTGTTGCTGGAGATTCTGTCCTATTTATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATTCGTCGTGCTACTAGGCCACAAACTGTGATGCCATCTTCTGTTTTATCAAGTGACAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCCACTAATAGCTGTTTCACAATCTTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCTCTTTCGAAATATGTTAAAGCAGTATTTCACACTCGTGTTTCTGTTGGAATGCGTTTTCGGATGCTTTTTGAGACCGAGGAATCAAGTGTTCGTAGGTACATGGGTACGATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCGGTTAAGGTTGGTTGGGATGAGTCAACTGCAGGTGAGAGGCAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTAACAACTTTCCCCATGTATCCATCATTGTTTCCCCTCAGACTAAAACGACCCTGGCATCCTGGGGCCTCATCTTTGCATGACAGCAGAGACGAAGCTGCTAATGGCTTAATGTGGCTAAGGGGAGAAACTGGAGACCAAGGTCTTCAGTCACTGAATTTTCAAACTGTTGGTATGTTTCCTTGGACGCAGCAGAGGCTGGATCCAACATTTCTAGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCAGCTGGGTTGCAGAATTTAGGAAGCGGGGATCCTCTGAAACAGCAATACATGCAGTTTCAGCAGCCTTTCCAATATCTTCAACAGACGGGCAGCAATAATCCATTGTTGCAGCAGCGGCAGCAGCCCCAAGTGATTCAACAAACAATTCCTCAACATATGTCGCATGCGCAAACTCAAATTTTACAAGATAACTTGCCCCGGCACCTTCTACAGCAACAACTTAACAATCAACAGGAGCAGCCACAGCAGCAACATTCTTATCAAGAATCATTTCAGATTCAAAGTGATCAGCTCCAGCAGAGGCCGCAGCCAAATGTGCCATCTCTATCATTTTCAAAAGCTGACTTCCCAGATTCTAACACCAAGTTCTCATCTATTACTCCTTCCAGTATGCAAAATATGCTTGGTTCTATGTGTCCTGAAGGAAGTGGCAATCTCTTGAACTTCTCGAGAACAACTGGTCAGTCTATGCTTAGTGAGCAGCCACCACAACAACCATGGGCAACAAAGTTCACACATTCACAGTTCAATGCCTTTGCCAACTCAACTTCGCTCCCACCATTTACGGGGAAGGATGCTGCAGTGGAACCAGAAAACTGTAACTTGGATGCCCAGAATCATACTCTTTTTGGTGTAAACATTGATTCGTCTGGGCTGCTACTCCCCACAACAGTGCCCAGTTTTGGTAGCTCCTCAGTTGATGCTGATGTTTCCTCGATGCCATTAGGGGCTTCTGGGTTTCAGGGCTCTTTATTTGGTTGCGTGCAAGACCCTTCAGAGTTGTTGCAGAATGCAGGACAAGTTGATCCTCCAACTCCAAGCCGAACATTTGTCAAGGTTTACAAATCGGGATCGGTTGGGCGGTCATTAGACATCACCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCAGCCCAAATAGTGCTCAAAGGATGAATAGCAGTGGAACTGATGATCGAGACCTTGTTTCTGGACTACCCTCTGCTGGGTCGCTCGAGTACTGA 2010 0.4582 MLYFLLSSGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGASSLHDSRDEAANGLMWLRGETGDQGLQSLNFQTVGMFPWTQQRLDPTFLGNDHNQQYQAMLAAGLQNLGSGDPLKQQYMQFQQPFQYLQQTGSNNPLLQQRQQPQVIQQTIPQHMSHAQTQILQDNLPRHLLQQQLNNQQEQPQQQHSYQESFQIQSDQLQQRPQPNVPSLSFSKADFPDSNTKFSSITPSSMQNMLGSMCPEGSGNLLNFSRTTGQSMLSEQPPQQPWATKFTHSQFNAFANSTSLPPFTGKDAAVEPENCNLDAQNHTLFGVNIDSSGLLLPTTVPSFGSSSVDADVSSMPLGASGFQGSLFGCVQDPSELLQNAGQVDPPTPSRTFVKVYKSGSVGRSLDITRFSSYHELREELGQMFGIEGKLENPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPEDVQKMGKQGIESGFSPNSAQRMNSSGTDDRDLVSGLPSAGSLEY* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0819 669 Gene3D - 539 631 - -
Vvi4g0819 669 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 632 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi4g0819 669 Pfam Auxin response factor 77 160 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi4g0819 669 MobiDBLite consensus disorder prediction 635 656 - -
Vvi4g0819 669 MobiDBLite consensus disorder prediction 304 323 - -
Vvi4g0819 669 FunFam Auxin response factor 115 187 - -
Vvi4g0819 669 MobiDBLite consensus disorder prediction 632 669 - -
Vvi4g0819 669 SUPERFAMILY CAD & PB1 domains 538 616 - -
Vvi4g0819 669 CDD B3_DNA 5 51 IPR003340 GO:0003677
Vvi4g0819 669 MobiDBLite consensus disorder prediction 342 433 - -
Vvi4g0819 669 FunFam Auxin response factor 538 631 - -
Vvi4g0819 669 Gene3D - 115 187 - -
Vvi4g0819 669 SUPERFAMILY DNA-binding pseudobarrel domain 9 80 IPR015300 -
Vvi4g0819 669 Gene3D - 3 53 IPR015300 -
Vvi4g0819 669 Pfam B3 DNA binding domain 8 52 IPR003340 GO:0003677
Vvi4g0819 669 ProSiteProfiles B3 DNA-binding domain profile. 1 53 IPR003340 GO:0003677
Vvi4g0819 669 ProSiteProfiles PB1 domain profile. 542 626 IPR000270 GO:0005515
Vvi4g0819 669 Pfam AUX/IAA family 539 627 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0819 Vvi-Chr4 10435489 10447838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0819 9 638 B3 DNA Binding Superfamily AT5G37020 66.511 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi4g0819 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0819 - - vvi:100258129 1273.84