Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0817 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGCAAGGGCATGAAGGGGAGAAAAAGTGTTTGAATTCAGAGCTATGGCATGCTTGTGCTGGCCCTCTTGTGTCCCTGCCTACCGTTGGGAGCCGTGTGGTTTACTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCCACAACTAACAAAGAGGTTGATGGGCACATACCCAATTACCCGAGCTTGCCACCGCAGTTGATCTGCCAACTTCACAATGTCACAATGCATGCAGATGTGGAAACTGATGAAGTGTATGCACAAATGACTTTGCAGCCACTTACACCGCAAGAGCAAAAGGATACATTTCTTCCTGTGGAGTTGGGTATCCCGAGCAAGCAGCCCACCAATTACTTTTGCAAGACTCTCACAGCAAGTGATACTAGTACCCACGGGGGGTTCTCTGTTCCTCGTCGCGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCTCAGCAGCCTCCAGCTCAGGAACTTATTGCAAGGGATCTCCATGATGTTGAGTGGAAGTTCAGGCATATTTTTCGAGGTAGTGTTTATACTAATTGTTTTTTTAATTGTTTCTGTTCTTCTAAGTTCATAAGAATCTTGCCTTTTGGTATATTTTATGTTTTTCTTAGTTAA 651 0.4547 MKLSTSGLGQQQGHEGEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPVELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGSVYTNCFFNCFCSSKFIRILPFGIFYVFLS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0817 216 SUPERFAMILY DNA-binding pseudobarrel domain 111 187 IPR015300 -
Vvi4g0817 216 CDD B3_DNA 127 187 IPR003340 GO:0003677
Vvi4g0817 216 Gene3D - 126 205 IPR015300 -
Vvi4g0817 216 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 187 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0817 Vvi-Chr4 10403355 10404569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0817 1 186 B3 DNA Binding Superfamily AT1G30330 86.170 1.02e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi4g0817 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0817 - - vvi:100258129 390.578