Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0815 ATGGGGTTTGACCCTTTGAGATGTTCATTTGTGAAAGCAGTCCAAGTGATCTATGAAGGGACTGAATCAGCATGGGAGCATAGAATGGAGGTTTATAGGAGATGTGGTTGGACAGACTATGAGATTATGTTGATGTTCAGACAGGGTCCTTACATTATGAAGTCATCTGAGAAGAAAATAATGAGTGGGATGGATTTTTTGGTTAATAGAATGGGTTGGCAACCTGCGGCTATTGCTAGATTTCCAATAGTTTTCTTGCTCAGTTTGGAGAAGAGGACAATTCCAAGGTGTTCAGTGGTGAAAGTTCTGCGAATGAAGGGGTTGGTAAAGAAGAATTTGAGCTTAAGTGCTATTTTGGCTTGCACTGGAAGGGTTTTCTTGGATAAGTTTGTGGTCAAATATCAGGAAGATATTCCTCACTTGTTCAATGTATATAAAGGGAAAATGGATTTTCTGGAACTCGACTTTGGATCTGACATAAGGGGATGA 489 0.4008 MGFDPLRCSFVKAVQVIYEGTESAWEHRMEVYRRCGWTDYEIMLMFRQGPYIMKSSEKKIMSGMDFLVNRMGWQPAAIARFPIVFLLSLEKRTIPRCSVVKVLRMKGLVKKNLSLSAILACTGRVFLDKFVVKYQEDIPHLFNVYKGKMDFLELDFGSDIRG* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0815 162 SMART mt_12 43 74 IPR003690 GO:0003690|GO:0006355
Vvi4g0815 162 SMART mt_12 7 38 IPR003690 GO:0003690|GO:0006355
Vvi4g0815 162 SMART mt_12 75 109 IPR003690 GO:0003690|GO:0006355
Vvi4g0815 162 FunFam Mitochondrial transcription termination factor-like 1 138 - -
Vvi4g0815 162 Gene3D Transcription termination factor 3, mitochondrial 1 152 IPR038538 -
Vvi4g0815 162 PANTHER CGI-12 PROTEIN-RELATED 1 135 IPR003690 GO:0003690|GO:0006355
Vvi4g0815 162 Pfam mTERF 21 126 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0815 Vvi-Chr4 10284415 10284903 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi4g0815 mTERF 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0815 K15032 - vvi:100245941 209.92