Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0812 ATGGAGTCCAGAGGCTTGAGGCCATTGATGGCAGTGGTAATATGGTGGTGGTGGCTGATAAGCCCAGCTGTTTCAGATCCACAAACAAACCTGCTCAACCAGGGATGCAGCACATACAACGTCACCAACCTATCAGACTTCTACACCAACCTCAACGCCACGTTCTCTGACCTCGAAACGCAGTTGAACAATAACAAGCTCTTCGACACAGCAGAGAGAACGAGGAGTGGAGACTCTGTGTACGCCATGGTGCAGTGCAGAAACTACATGTCCGCTGAGGACTGCTTGGCTTGCTTCGCCGATGCTCAGTCGCTCATCCGCAGATGCGGTGCTGCCAACGGCGCTCGCGTCATCTACGATGGCTGCTTCCTCAGGTATGAGAGCAGCAGCTTCTACGACCAAACCACTCTCGCTGGAAATGCTCCAATTTGTGGGAACGACACGGCATCGCAGGTGACTGCTTTTCAATCAGCAGTAGAAGGACTGATAGCAGATCTTGAAGTTGCAACACCCAGGATTAATCGTTTCTATGCGGCATATAAAATGGAAGTGGTTGGTGGTGGTGGTGCAACAGTGTATGGGGTGGCACAATGTGCTGAAACAGCCAGTCAGACTGCTTGCCAAGAATGCTTGCAAGTGGCAAAGAGCAATATAAACAGTTGTCTTCCCAGTAAAAACGGCCGGGCTATTGATGCTGGATGTTTCCTGAGGTACTCAGATGTGGCCTTCTTTGCTGACAACCAGACAACTAATATCACACCCTTCTTACAAAAAGGAGGTTCAAACAAGAAGAAAGCGATTATTGGAGGAGTGGTTGGAGGTGTAGGTATTGTTTTGATTATCGTAGTTTTGCTTTTATGGTATCGGACCTATCGGTCATCAAGAAAGGCAAAGCTGGCTTCTACAGGTGATTTATTAGGTGTGACAGAGTTGCAAGGCCCAGTGAATTACAGCTACAATGATTTGAAAACTGCAACCAGGATGTTCAGTGAAGAAAATAAACTTGGAGAGGGAGGATTTGGTGACGTCTATAAGGGTCATTTGAAGAATGGGAAAATTGTTGCTGTTAAGAAACTATTTATAGGTCAAACAGACGGGGCAAAGGCAAATTTCGAGAGTGAAGTAAAGCTTATAAGTAATGTTCATCATCGCAATCTCATCCGTCTTCTTGGATGTTGTAGCAAAAAATCAGAATTGCTTCTTGTGTACGAGTACATGGCAAATAGCAGCCTGGATAAATTCTTATTTGGAGAAAAGCGAGGGGCTCTCAACTGGAAACAACGTTTGAATATAATTGTTGGTATAGCGAGGGGTCTTGCGTATTTACATGAGGAGTTCCATGTGTGTATCATACACCGAGACATAAAACCTAACAATGTTCTTCTTGATGACGATTTCCAACCCAGAATTGCAGATTTTGGATTGGCAAGGCTTCTACCTGAGGACCAGACTCATGTTAGCACCAAATTTGCTGGAACATTGGGTTACACTGCACCTGAATATGCAATCCATGGACAGCTATCTGCGAAGGCTGATACCTACAGCTATGGTGTTGTAGTCCTTGAAATCATAAGCGGCCAAAGGTGCAACGAGATGAAGGTTGAACCTGTCACTGAATTCTTGCTTGAACGGGCATGGAAACTGTACGAGAATGACAATCACTTGGAGTTGGTGGATGAGAGCTTAGACCCTGAGGAATATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGCTCTGTTGTGCACTCAATCATCAGCTTCCATGAGGCCCACAATGTCTGAAATTGTTGTTATGCTATACAGCAAGGACGCACTTCAGCATGGTCCCCCAACCAGGCCCACCTTCATTTCTTCCAATAACAGAGCTGGCGGAGATACTTCCGCGTCCACTTGGGACTACGCTTCCAATGCCACTGCCTCTTTTTCTGGGGTCTCAGGTCGTTAA 1947 0.4592 MESRGLRPLMAVVIWWWWLISPAVSDPQTNLLNQGCSTYNVTNLSDFYTNLNATFSDLETQLNNNKLFDTAERTRSGDSVYAMVQCRNYMSAEDCLACFADAQSLIRRCGAANGARVIYDGCFLRYESSSFYDQTTLAGNAPICGNDTASQVTAFQSAVEGLIADLEVATPRINRFYAAYKMEVVGGGGATVYGVAQCAETASQTACQECLQVAKSNINSCLPSKNGRAIDAGCFLRYSDVAFFADNQTTNITPFLQKGGSNKKKAIIGGVVGGVGIVLIIVVLLLWYRTYRSSRKAKLASTGDLLGVTELQGPVNYSYNDLKTATRMFSEENKLGEGGFGDVYKGHLKNGKIVAVKKLFIGQTDGAKANFESEVKLISNVHHRNLIRLLGCCSKKSELLLVYEYMANSSLDKFLFGEKRGALNWKQRLNIIVGIARGLAYLHEEFHVCIIHRDIKPNNVLLDDDFQPRIADFGLARLLPEDQTHVSTKFAGTLGYTAPEYAIHGQLSAKADTYSYGVVVLEIISGQRCNEMKVEPVTEFLLERAWKLYENDNHLELVDESLDPEEYDAEEVKKIIEIALLCTQSSASMRPTMSEIVVMLYSKDALQHGPPTRPTFISSNNRAGGDTSASTWDYASNATASFSGVSGR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0812 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vvi4g0812 648 FunFam Cysteine-rich receptor-like protein kinase 2 406 608 - -
Vvi4g0812 648 Gene3D - 140 243 IPR038408 -
Vvi4g0812 648 Gene3D - 28 131 IPR038408 -
Vvi4g0812 648 FunFam Cysteine-rich receptor-like protein kinase 2 28 131 - -
Vvi4g0812 648 FunFam Cysteine-rich receptor-like protein kinase 2 139 243 - -
Vvi4g0812 648 CDD STKc_IRAK 335 600 - -
Vvi4g0812 648 SMART serkin_6 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0812 648 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0812 648 Pfam Protein tyrosine and serine/threonine kinase 332 599 IPR001245 GO:0004672|GO:0006468
Vvi4g0812 648 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Vvi4g0812 648 FunFam Cysteine-rich receptor-like protein kinase 2 294 405 - -
Vvi4g0812 648 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Vvi4g0812 648 SUPERFAMILY Protein kinase-like (PK-like) 311 602 IPR011009 -
Vvi4g0812 648 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
Vvi4g0812 648 Gene3D Phosphorylase Kinase; domain 1 306 405 - -
Vvi4g0812 648 Pfam Salt stress response/antifungal 36 128 IPR002902 -
Vvi4g0812 648 Pfam Salt stress response/antifungal 144 240 IPR002902 -
Vvi4g0812 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 81 624 - -
Vvi4g0812 648 Gene3D Transferase(Phosphotransferase) domain 1 406 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0812 Vvi-Chr4 10121389 10126073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0812 26 648 Receptor kinase-like Gene Family AT1G70520 37.480 1.09e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi4g0812 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0812 - - vvi:100241075 1272.69