Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0811 ATGGAGTTCGGCAGAGGCTTGGTGTCCTTGATGACAGTGGGAATATGGTGGTGGTGGTTGATGAGAGAAGCTGTTTCAGACCCACAAACCAACCTGCTAATCCAGGGATGCAGTACATACAGCCCCCCCAACCTTTCCGACTTCTACAGCAACCTCAACGACACCTTGTCTGACCTCAAAACGCAGTTAAGCGACAACAAGCGCTTCGCCACGGCACAGAGAACAAGGAGTACGGGCACTGTCTACGGCCTGGCGCAGTGCAGAAATTACATGTCCACTGAGGACTGTGTGGCTTGCTTCAACACTGCTCAGTCAGACATACGCAATTGCTCTTCAGCCAATGGCGCTCGCGTTATCTACGATGGCTGCTTCCTCAGATATGAGAGCAGCAGCTTCTACGACGAAACTACTGGCTCTGGCAATACTGCAATTTGTGGCAACCAGACTGCAGCACAGGCGACTGCTTTCCAAGAAGCAGTAAACGGACTATTATCAGATCTTGAAACTGCAACACCCAGAACTAATGATTCCTATGCAGCATATAAAAAGGAAGTGGTCGGAGGTGGTGGTGCAACCGTGTATGGGGTGGCTCAATGTGTTGAAAGGGCGAGTGCAAGTGCTTGCAAAGAGTGCTTGAAAGTCGCAGATGGAAACATAAAGAGTTGTCTTCCCAGTACAGACGGTAGGGCTGTTGATGCAGGATGTTTCCTGAGGTACTCAAACACGCCTTTCTTTGCTGATAACCAGACCACGGATATCTTGCCCTTCCTAGAAAAAGGAGGTTCAACCAAGAAGAAAGCCATTATAGGAGGAGTGGTTGGAGGTGTATGCCTATTCTTGCTCCTCATTATGTTGTTTGTATGGCATCAGCACTCAAGAAGGGCAAAGGCAGCTCCTAGAGGTGATATGTTAGGGGTACCCGAGTTGCAAGGCCCAGTAAATTACAGCCACAGAGACTTGAAATCTGCAACAAAAAATTTTAGAGCTGAATATAAACTTGGAAAGGGAGGCTTTGGTGATGTCTATAAGGGTTATTTGAAAAATGGGACAACGGTTGCAGTTAAGAAGCTAATTATAGGTCAACCCAATAGGGCAAAGGCAGATTTTGAGAGTGAAGTCAAGATCATAAGTAATGTTCATCATCGCAATCTCCTCCGTCTTCTTGGATGTTGTAAAAAAGGATCAGAACTACTTCTTGTCTATGAATACATGGTCAATAGCAGCCTTGATAAATTCTTATTTGGCGAAAGGCGAGGAGCTCTCAACTGGAGACAACGGTTTGATATAATAGTTGGGACAGCAAGGGGTCTTGCCTATTTACATGAGGAATTCCATGTCTGTATTATACACCGTGATATAAAATCCAGCAATATTCTTCTTGACAATGATTTCCAGCCCAGAATTGCAGATTTTGGGTTGGCAAGGCTTCTACCAGAGGACCAGACTCATCTCAGCACAAAAGTCGCTGGAACATTGGGTTATACTGCACCTGAATATGCAATCCTTGGACAGTTATCTGAAAAGGTTGATACCTATAGCTATGGGGTTGTCGTCCTTGAAATCATAAGTGGCCGCAAGTGCAATGAAATGAAGGCTGAAGATGTCACCGAATACTTGCTTGAACGGGCATGGACACTTTACGAGAATGACAAGCATTTAGAGTTGGTGGACGAGAGCTTAGACCCTGAGGAATATAAAGCCGAAGAAGTGAAGAAGATCATAGAGATTGCTTTGATGTGCACTCAGTCATCAGTTTCTATGAGGCCCACAATGTCTGAAGTAGTTTTCTTGCTACGCAGCAAGATCAGCTCACTTGAGCATGGACCCCCAACTAGGCCTGCTTTCATTGATTCCGACTATAGAGCTCATGGAGACTCTTCCACCGCTACTGGGTCCTCTGCTTCCAATGCCACTGCTTCTATTTCTCACTTCTCAGGTCGATGA 1944 0.4588 MEFGRGLVSLMTVGIWWWWLMREAVSDPQTNLLIQGCSTYSPPNLSDFYSNLNDTLSDLKTQLSDNKRFATAQRTRSTGTVYGLAQCRNYMSTEDCVACFNTAQSDIRNCSSANGARVIYDGCFLRYESSSFYDETTGSGNTAICGNQTAAQATAFQEAVNGLLSDLETATPRTNDSYAAYKKEVVGGGGATVYGVAQCVERASASACKECLKVADGNIKSCLPSTDGRAVDAGCFLRYSNTPFFADNQTTDILPFLEKGGSTKKKAIIGGVVGGVCLFLLLIMLFVWHQHSRRAKAAPRGDMLGVPELQGPVNYSHRDLKSATKNFRAEYKLGKGGFGDVYKGYLKNGTTVAVKKLIIGQPNRAKADFESEVKIISNVHHRNLLRLLGCCKKGSELLLVYEYMVNSSLDKFLFGERRGALNWRQRFDIIVGTARGLAYLHEEFHVCIIHRDIKSSNILLDNDFQPRIADFGLARLLPEDQTHLSTKVAGTLGYTAPEYAILGQLSEKVDTYSYGVVVLEIISGRKCNEMKAEDVTEYLLERAWTLYENDKHLELVDESLDPEEYKAEEVKKIIEIALMCTQSSVSMRPTMSEVVFLLRSKISSLEHGPPTRPAFIDSDYRAHGDSSTATGSSASNATASISHFSGR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0811 647 FunFam Cysteine-rich receptor-like protein kinase 2 140 244 - -
Vvi4g0811 647 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Vvi4g0811 647 ProSiteProfiles Protein kinase domain profile. 327 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0811 647 MobiDBLite consensus disorder prediction 626 647 - -
Vvi4g0811 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 627 - -
Vvi4g0811 647 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Vvi4g0811 647 FunFam Cysteine-rich receptor-like protein kinase 2 404 606 - -
Vvi4g0811 647 Gene3D - 140 244 IPR038408 -
Vvi4g0811 647 Gene3D - 29 132 IPR038408 -
Vvi4g0811 647 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Vvi4g0811 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vvi4g0811 647 Pfam Protein tyrosine and serine/threonine kinase 330 595 IPR001245 GO:0004672|GO:0006468
Vvi4g0811 647 CDD STKc_IRAK 333 595 - -
Vvi4g0811 647 Gene3D Phosphorylase Kinase; domain 1 305 403 - -
Vvi4g0811 647 FunFam Cysteine-rich receptor-like protein kinase 2 29 132 - -
Vvi4g0811 647 SUPERFAMILY Protein kinase-like (PK-like) 309 598 IPR011009 -
Vvi4g0811 647 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Vvi4g0811 647 SMART serkin_6 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0811 647 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Vvi4g0811 647 Pfam Salt stress response/antifungal 145 241 IPR002902 -
Vvi4g0811 647 FunFam Cysteine-rich receptor-like protein kinase 2 293 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0811 Vvi-Chr4 10077284 10086081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0811 21 647 Receptor kinase-like Gene Family AT1G70520 38.066 2.18e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi4g0811 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0811 - - vvi:100256473 1251.11