Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0800 ATGCATACTGCGGAAGTAACCCTTTCATCTCAGCAGCTTGCTGTGATAGAGAAATTGAAAAAGTGTCATGCTGCCCAAGACCAAAAAGAGCTTTTTGCTGCTATTCACACAGAAGTTGAGGAGAAGCACCAGCCAGAATGTGTAGGGAAGTCTGAGTTGGAGCCAGCCAACAATAAGTTACATGATGAAGAGCCATCCTCATCGCACATTTTAACTCTGGAAAATGGTGGGGCTTGTACAAAGCCTGCAATTCGCAAACCATCCTTTGATGGCACCGATGAGCAAAATGATAGTGCTGTTGCCTTTGAAGTCAAGGCACATGCTAATCATTTAGATGTAGGAGGAGATCAGAAAGTTTCAATTGAAAACAATCCCATTAATGGGGAAAGGCTTGACAGTGCAGGGACTGTAACTAATGAAGAATCTGCTACCATGCTTCCTGTTGAGAAGCTTTCTGTAAGTAGCCTGAAAGTGGAGGAAGAAGGCATGGAATTTGATGTCAAATCTGATAGGGACATGTTAGATATTGAATTTCAGAAAGAAGAAGGTTATTCTGACGTGGTTACTAAATGTGGAAATTATAGAGGCAAAGATGCTGTTTCTTCTGATATGAGAAGTAGAAAAAATGAAGTAAAAAATGCCATTTCGAGCAAAATAAATGAAGCTTCTTGTTTGCCATCAAAAGGAAAAATTGGCATTGATGTGATGGATGAAACTAGAGAGGAGGTAGATGTGAGAGGGAGGCATAGAGGTAGAAAGAGGAAGCGAAAGACAAAACATTTTGCTTCAGTTGCCCAGTCAAAAAAATTAACAAAACAGATTACTAGCACCACAGAGTCTGAGAATGGAAGGGGAGCCAAAGTGGAAAAAAGTGAAAGACAAGACGAGGTTGATGCTGTTTTCTCTGATATACATTCTTCAACAAATGAAGTGCTCCAGCAAGGTGAGTTTTCTGATGATCATATGGCTTCTGGAAATAAGTTGGTTGGATTTGACAAAGAAGGGGGAGGTGCTGTTTGGGACATTTTCCGGAGACAGGATGTTCCCAAGCTCCAGGAGTATCTCAGAAAACATCACAGGGAATTCAGGCATACCCACTGCTCTCCAGTTGAGCAGGTTGTTCACCCTATTCATGATCAAACTTTCTACCTGACTTTGCATCACAAAAGAAAGCTGAAGGAGGAGTTCGGAGTTGAACCTTGGACATTTGTACAAAAACTTGGAGAGGCAGTCTTTATACCTGCTGGATGTCCTCATCAAGTTAGGAATCTTAAGTCATGCATAAAGGTTGCTCTTGATTTTGTCTCACCTGAAAATATTCATGAGTGCGTGCGTTTGACTGAGGAATTTCGTGCTCTTCCGCATAACCACAGAGCTAAGGAGGACAAATTAGAGGTACATTATCTTATTCCTCATAGTATACCATATTTTCTTTGGTTAAATCCTTTGTGTTAA 1455 0.4089 MHTAEVTLSSQQLAVIEKLKKCHAAQDQKELFAAIHTEVEEKHQPECVGKSELEPANNKLHDEEPSSSHILTLENGGACTKPAIRKPSFDGTDEQNDSAVAFEVKAHANHLDVGGDQKVSIENNPINGERLDSAGTVTNEESATMLPVEKLSVSSLKVEEEGMEFDVKSDRDMLDIEFQKEEGYSDVVTKCGNYRGKDAVSSDMRSRKNEVKNAISSKINEASCLPSKGKIGIDVMDETREEVDVRGRHRGRKRKRKTKHFASVAQSKKLTKQITSTTESENGRGAKVEKSERQDEVDAVFSDIHSSTNEVLQQGEFSDDHMASGNKLVGFDKEGGGAVWDIFRRQDVPKLQEYLRKHHREFRHTHCSPVEQVVHPIHDQTFYLTLHHKRKLKEEFGVEPWTFVQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIHECVRLTEEFRALPHNHRAKEDKLEVHYLIPHSIPYFLWLNPLC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0800 484 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 472 IPR045109 GO:0032454|GO:0033169
Vvi4g0800 484 MobiDBLite consensus disorder prediction 40 68 - -
Vvi4g0800 484 ProSiteProfiles JmjC domain profile. 253 451 IPR003347 -
Vvi4g0800 484 FunFam Transcription factor jumonji (JmjC) domain-containing protein 266 460 - -
Vvi4g0800 484 Pfam JmjC domain, hydroxylase 332 434 IPR003347 -
Vvi4g0800 484 MobiDBLite consensus disorder prediction 264 282 - -
Vvi4g0800 484 SUPERFAMILY Clavaminate synthase-like 338 467 - -
Vvi4g0800 484 MobiDBLite consensus disorder prediction 249 263 - -
Vvi4g0800 484 Gene3D Cupin 257 460 - -
Vvi4g0800 484 SMART cupin_9 8 451 IPR003347 -
Vvi4g0800 484 MobiDBLite consensus disorder prediction 242 297 - -
Vvi4g0800 484 MobiDBLite consensus disorder prediction 283 297 - -
Vvi4g0800 484 MobiDBLite consensus disorder prediction 40 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0800 Vvi-Chr4 9646797 9657823 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi4g0800 JmjC 2.9e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0800 K15601 - vvi:100244450 929.858