Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0800 | ATGCATACTGCGGAAGTAACCCTTTCATCTCAGCAGCTTGCTGTGATAGAGAAATTGAAAAAGTGTCATGCTGCCCAAGACCAAAAAGAGCTTTTTGCTGCTATTCACACAGAAGTTGAGGAGAAGCACCAGCCAGAATGTGTAGGGAAGTCTGAGTTGGAGCCAGCCAACAATAAGTTACATGATGAAGAGCCATCCTCATCGCACATTTTAACTCTGGAAAATGGTGGGGCTTGTACAAAGCCTGCAATTCGCAAACCATCCTTTGATGGCACCGATGAGCAAAATGATAGTGCTGTTGCCTTTGAAGTCAAGGCACATGCTAATCATTTAGATGTAGGAGGAGATCAGAAAGTTTCAATTGAAAACAATCCCATTAATGGGGAAAGGCTTGACAGTGCAGGGACTGTAACTAATGAAGAATCTGCTACCATGCTTCCTGTTGAGAAGCTTTCTGTAAGTAGCCTGAAAGTGGAGGAAGAAGGCATGGAATTTGATGTCAAATCTGATAGGGACATGTTAGATATTGAATTTCAGAAAGAAGAAGGTTATTCTGACGTGGTTACTAAATGTGGAAATTATAGAGGCAAAGATGCTGTTTCTTCTGATATGAGAAGTAGAAAAAATGAAGTAAAAAATGCCATTTCGAGCAAAATAAATGAAGCTTCTTGTTTGCCATCAAAAGGAAAAATTGGCATTGATGTGATGGATGAAACTAGAGAGGAGGTAGATGTGAGAGGGAGGCATAGAGGTAGAAAGAGGAAGCGAAAGACAAAACATTTTGCTTCAGTTGCCCAGTCAAAAAAATTAACAAAACAGATTACTAGCACCACAGAGTCTGAGAATGGAAGGGGAGCCAAAGTGGAAAAAAGTGAAAGACAAGACGAGGTTGATGCTGTTTTCTCTGATATACATTCTTCAACAAATGAAGTGCTCCAGCAAGGTGAGTTTTCTGATGATCATATGGCTTCTGGAAATAAGTTGGTTGGATTTGACAAAGAAGGGGGAGGTGCTGTTTGGGACATTTTCCGGAGACAGGATGTTCCCAAGCTCCAGGAGTATCTCAGAAAACATCACAGGGAATTCAGGCATACCCACTGCTCTCCAGTTGAGCAGGTTGTTCACCCTATTCATGATCAAACTTTCTACCTGACTTTGCATCACAAAAGAAAGCTGAAGGAGGAGTTCGGAGTTGAACCTTGGACATTTGTACAAAAACTTGGAGAGGCAGTCTTTATACCTGCTGGATGTCCTCATCAAGTTAGGAATCTTAAGTCATGCATAAAGGTTGCTCTTGATTTTGTCTCACCTGAAAATATTCATGAGTGCGTGCGTTTGACTGAGGAATTTCGTGCTCTTCCGCATAACCACAGAGCTAAGGAGGACAAATTAGAGGTACATTATCTTATTCCTCATAGTATACCATATTTTCTTTGGTTAAATCCTTTGTGTTAA | 1455 | 0.4089 | MHTAEVTLSSQQLAVIEKLKKCHAAQDQKELFAAIHTEVEEKHQPECVGKSELEPANNKLHDEEPSSSHILTLENGGACTKPAIRKPSFDGTDEQNDSAVAFEVKAHANHLDVGGDQKVSIENNPINGERLDSAGTVTNEESATMLPVEKLSVSSLKVEEEGMEFDVKSDRDMLDIEFQKEEGYSDVVTKCGNYRGKDAVSSDMRSRKNEVKNAISSKINEASCLPSKGKIGIDVMDETREEVDVRGRHRGRKRKRKTKHFASVAQSKKLTKQITSTTESENGRGAKVEKSERQDEVDAVFSDIHSSTNEVLQQGEFSDDHMASGNKLVGFDKEGGGAVWDIFRRQDVPKLQEYLRKHHREFRHTHCSPVEQVVHPIHDQTFYLTLHHKRKLKEEFGVEPWTFVQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIHECVRLTEEFRALPHNHRAKEDKLEVHYLIPHSIPYFLWLNPLC* | 485 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0800 | 484 | PANTHER | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN | 1 | 472 | IPR045109 | GO:0032454|GO:0033169 | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 40 | 68 | - | - | |
Vvi4g0800 | 484 | ProSiteProfiles | JmjC domain profile. | 253 | 451 | IPR003347 | - | |
Vvi4g0800 | 484 | FunFam | Transcription factor jumonji (JmjC) domain-containing protein | 266 | 460 | - | - | |
Vvi4g0800 | 484 | Pfam | JmjC domain, hydroxylase | 332 | 434 | IPR003347 | - | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 264 | 282 | - | - | |
Vvi4g0800 | 484 | SUPERFAMILY | Clavaminate synthase-like | 338 | 467 | - | - | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 249 | 263 | - | - | |
Vvi4g0800 | 484 | Gene3D | Cupin | 257 | 460 | - | - | |
Vvi4g0800 | 484 | SMART | cupin_9 | 8 | 451 | IPR003347 | - | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 242 | 297 | - | - | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 283 | 297 | - | - | |
Vvi4g0800 | 484 | MobiDBLite | consensus disorder prediction | 40 | 76 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g0800 | Vvi-Chr4 | 9646797 | 9657823 | Dispersed/Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Jumonji | Vvi4g0800 | JmjC | 2.9e-17 | CL0029 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0800 | K15601 | - | vvi:100244450 | 929.858 |