Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0793 ATGGGGATTAGGGTTTTTGCATTGAGGACAAGATCGGAGGAGGATATCATGGATGATGGGTTTAAGTGGAGAAAATATGGAAAAAAGAAGATCAAGAGCAACCCGATTTATCCAAGGAACTACTATAGATGTTCAAGCAGAGGATGCCAAGTGAAGAAGAGGGTAGAAAGGGATAGGGATGACTCAAGTTATGTAATAACTACATATGAGGGAGTCCACAACCACCCCACCCCTCGCAACCACATCACACTTCCTATTAATTATTGGGCTTTGCAACAAACTTCTTCTCACCCTCCTTTTTATTAA 306 0.415 MGIRVFALRTRSEEDIMDDGFKWRKYGKKKIKSNPIYPRNYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHPTPRNHITLPINYWALQQTSSHPPFY* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0793 101 SUPERFAMILY WRKY DNA-binding domain 9 78 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0793 101 Pfam WRKY DNA -binding domain 18 76 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0793 101 FunFam WRKY transcription factor 57 3 78 - -
Vvi4g0793 101 Gene3D WRKY domain 3 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0793 101 ProSiteProfiles WRKY domain profile. 12 78 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0793 101 SMART WRKY_cls 17 77 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0793 101 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 80 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0793 Vvi-Chr4 9409805 9411257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0793 2 80 WRKY Transcription Factor Family AT5G64810 72.152 3.83e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0793 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0793 - - vvi:100852944 220.705