Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0787 ATGGCGGTTGAGCTTCTAGGGTTTTCCAAAATGGATGAGCAGATCGCGATTCAAGATGCGGCTTCGGCTGGATTGAAGAGCATGGAGCATCTGATCCGCATGCTGTCTCATCAGACCAATCAAAACCACAACATGAATCAGCTCGATTGCAGGGAAATCACAGATTACACCGTTTCCAAGTTCAAGAAGGTCATTTCCATCTTGAACCGTACCGGCCACGCCCGCTTCCGCCGCGGACCGGTTTCTTCTTCTGATTCTCCCTCGTCTTCAACCTCCTCTGTGGCTCCTCAGACTCACGCCCTTACTCCTGCTCCTGTCACTTCACTTCCCGTTCCTCCGGCGGCGCCGCCTCCGGCGAGTTTTGTTCAGCGGCAGAGTTTGACGCTTGACTTCACCAAGCCTAATCTTGTGAGCTCCAACCCTGTGAGTAGCGATGTGGTTTCTACGAGTCAGTTCAGCAAAGAGAGCTTCGGCTTATCGCAGCCTATGTCGTCCGCGACAAATTCGTCATTTATGTCGTCGATCACCGGAGACGGCAGTGTTTCTAACGGAAAGCAGGGGTCATCTCTGTTTCTAGCTCCAGCGCCGGCCGTTTCTGCCGGTAAACCTCCTCTCTCATCTTCTTGCCGGAAGAGATGCCACGAGCATGATCATTCCGATGATATATCCGGAAAGTACTCCAGCTCCGGCCGTTGCCATTGCTCTAAAAGAAGGAGATCTCGGGTGAAGAAAACTATTAGAGTGCCAGCAATCAGTTCGAAAATCGCCGATATTCCTGCGGACGAGTACTCGTGGAGAAAGTACGGCCAGAAGCCAATCAAGGGCTCACCATACCCACGTGGTTATTACAAGTGCAGTAGCATGAGAGGGTGTCCCGCTAGGAAACACGTGGAGCGGGCCTCAGATGATCCAGCGATGCTGATCGTGACGTACGAGGGGGAGCACTCTCACTCACAGGTCGCGATGCAGGAGATGATACCCCACGGAGGAGTGGGCTTGGTGTTCGAGTCAACTTGA 1017 0.531 MAVELLGFSKMDEQIAIQDAASAGLKSMEHLIRMLSHQTNQNHNMNQLDCREITDYTVSKFKKVISILNRTGHARFRRGPVSSSDSPSSSTSSVAPQTHALTPAPVTSLPVPPAAPPPASFVQRQSLTLDFTKPNLVSSNPVSSDVVSTSQFSKESFGLSQPMSSATNSSFMSSITGDGSVSNGKQGSSLFLAPAPAVSAGKPPLSSSCRKRCHEHDHSDDISGKYSSSGRCHCSKRRRSRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERASDDPAMLIVTYEGEHSHSQVAMQEMIPHGGVGLVFEST* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0787 338 MobiDBLite consensus disorder prediction 81 97 - -
Vvi4g0787 338 Gene3D WRKY domain 245 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0787 338 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 322 IPR044810 GO:0003700
Vvi4g0787 338 ProSiteProfiles WRKY domain profile. 254 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0787 338 SUPERFAMILY WRKY DNA-binding domain 257 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0787 338 MobiDBLite consensus disorder prediction 76 97 - -
Vvi4g0787 338 Pfam Plant zinc cluster domain 210 257 IPR018872 -
Vvi4g0787 338 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0787 338 FunFam WRKY transcription factor 65 243 320 - -
Vvi4g0787 338 SMART WRKY_cls 259 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0787 Vvi-Chr4 9363343 9364925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0787 1 337 WRKY Transcription Factor Family AT2G24570 59.420 4.70e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0787 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0787 - - vvi:100254807 629.787