Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0777 ATGGCAGTGCAGTTGCATTTCTCCTTTGTCTCCCTCACTGCATTATTCATCTTGAGTTTGAGCTCCATTAATTCACTGACATCAGCTCAGGATTCAGGAACTGCAACATATTACACCCCTCCATACACACCTTCTGCTTGTTATGGGTTTGAAGATGACGGAGTGATGATTGCAGCAGCCAGTGACACGTTTTGGAACGATGGTGGCGCTTGCGGTCAGATGTATCAAGTGACCTGCCTGAGTGGAACAAACGAGGGAACTCCAGAACCATGCTTGGGAAGTGGCTCAGTGGTGGTGAAGATTGTGGACCATTGCCCCCCAGGCTCATGTAGGGGTACCATTGACTTGTCACAAGAGGCATTTGAATCTATTGCAGATACTGATGCTGGAGTTATCAACATCTCTTACCAACAGATCTGA 420 0.4738 MAVQLHFSFVSLTALFILSLSSINSLTSAQDSGTATYYTPPYTPSACYGFEDDGVMIAAASDTFWNDGGACGQMYQVTCLSGTNEGTPEPCLGSGSVVVKIVDHCPPGSCRGTIDLSQEAFESIADTDAGVINISYQQI* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0777 139 Pfam Lytic transglycolase 58 136 IPR009009 -
Vvi4g0777 139 Gene3D - 28 139 IPR036908 -
Vvi4g0777 139 SMART dpbb_1 57 136 IPR007112 -
Vvi4g0777 139 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 12 138 IPR044206 GO:0009627|GO:0048046
Vvi4g0777 139 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 139 IPR007112 -
Vvi4g0777 139 CDD DPBB_EG45-like 31 137 - -
Vvi4g0777 139 FunFam Barwin-related endoglucanase 30 138 - -
Vvi4g0777 139 SUPERFAMILY Barwin-like endoglucanases 29 139 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0777 Vvi-Chr4 8920373 8920986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0777 54 139 Expansin Gene Family AT1G62980 35.714 1.31e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0777 - - vvi:100264064 271.552