Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0776 ATGGCAATCAAGTTGCATTCCTCCTTGGTCTCTCTCACTGCATTATTAATCTTGAGTTTGAGCTCCATTTCACTGACTTCAGCTCAGGATTCAGGAACTGCAACATATTACACTCCTCCATACACCCCGTCAGCTTGTTATGGGTTCGAAGATGATGGAGTGATGATTGCAGCAGCCAGTGATGTGTTTTGGAACGATGGTGGGGCTTGTGGTCAGATGTATCAAGTGACTTGCCTGAGCGGAACAAACGAGGGAACTCCAGAACCATGCTTGGGAAGTGGCTCAGCGGTTGTGAAGATTGTGGACCATTGCCCCCCAGGCTCATGTAGGGGCACCATTGATTTGTCACAAAAGGCATTTGAATCCATTGCCGATACTAATGCCGGAGTTATCAACATCTCTTACCAACAAATCTGA 417 0.47 MAIKLHSSLVSLTALLILSLSSISLTSAQDSGTATYYTPPYTPSACYGFEDDGVMIAAASDVFWNDGGACGQMYQVTCLSGTNEGTPEPCLGSGSAVVKIVDHCPPGSCRGTIDLSQKAFESIADTNAGVINISYQQI* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0776 138 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 11 137 IPR044206 GO:0009627|GO:0048046
Vvi4g0776 138 SMART dpbb_1 56 135 IPR007112 -
Vvi4g0776 138 FunFam Barwin-related endoglucanase 29 137 - -
Vvi4g0776 138 CDD DPBB_EG45-like 30 136 - -
Vvi4g0776 138 SUPERFAMILY Barwin-like endoglucanases 28 138 IPR036908 -
Vvi4g0776 138 Pfam Lytic transglycolase 57 135 IPR009009 -
Vvi4g0776 138 Gene3D - 27 138 IPR036908 -
Vvi4g0776 138 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 138 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0776 Vvi-Chr4 8913280 8913872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0776 53 138 Expansin Gene Family AT1G62980 35.714 1.66e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0776 - - vvi:100241781 249.98