Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0775 ATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGTGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGGTAAAAATGGCTGGAGAGTTGAGCTTTCTCATAACTCTAGAGGTGGGGGTGGTGGTGGTCGTGGAGGAGGTCGTGGTCGATCTGGTGGTTCTGATTTGAAATGCTACGAGTGTGGTGAACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGGAGTTACAGTCCCCGCGGGCGATCCCCAAGACGCCGCAGTTTGTCTCCTCGTGGGCGCAGCTATAGCAGGTCACCAGGATATCGTGGACGTGAGGAATTGCCATATGCCAATGGAAATGGTCTTAGAGAGCGACGCAGAAGCAGAAGCTGA 546 0.5128 MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPGYRGREELPYANGNGLRERRRSRS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0775 181 CDD RRM_SRSF3_like 3 71 - -
Vvi4g0775 181 FunFam serine/arginine-rich splicing factor RSZ22-like 1 92 - -
Vvi4g0775 181 Gene3D - 88 148 - -
Vvi4g0775 181 MobiDBLite consensus disorder prediction 66 92 - -
Vvi4g0775 181 Gene3D - 1 73 IPR012677 -
Vvi4g0775 181 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
Vvi4g0775 181 FunFam Serine/arginine-rich splicing factor RSZ22A 90 149 - -
Vvi4g0775 181 SUPERFAMILY Retrovirus zinc finger-like domains 86 109 IPR036875 GO:0003676|GO:0008270
Vvi4g0775 181 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Vvi4g0775 181 Pfam Zinc knuckle 93 108 IPR001878 GO:0003676|GO:0008270
Vvi4g0775 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vvi4g0775 181 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 161 - -
Vvi4g0775 181 MobiDBLite consensus disorder prediction 106 181 - -
Vvi4g0775 181 SMART rrm1_1 3 69 IPR000504 GO:0003723
Vvi4g0775 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vvi4g0775 181 ProSiteProfiles Zinc finger CCHC-type profile. 93 108 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0775 Vvi-Chr4 8906855 8910939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0775 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 6.90e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0775 K12896 - vvi:100262399 249.21