Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0774 ATGCATATGATGAACCAAATGGAGTTCAAGAAGGAGAAGCTAGTGAGGTTTTGTAGTGATGAAAAACAAAATCTTGAAGTTTCCTGGGAAAAGGGTGAATCCCAACCGGTAGAAAGGCCAGTGAGTTACAAGGTTTTGCCCTCCTTATTGAACCCTGAAGGCAGGGCTGGTGAGAAGAATAGAACATATGGAACTCTCAGCTTTGGGAGGTTTAAGGTTTTCCCAGAAAGTCATGAACCATGGAGGAAACGAATTCTGGATCCTGGCAGTGATATTTTCTTGCAATGGAACAGAGTTTTCCTCTTCTCCTGTCTAGTAGCACTTTTTGTTGATCCATTGTTTTTCTACCTCCCTACTGTGGTTGGTGATGGCAATTCATCATGTGTGAAAACAGACTTGAATTTGGGAATTGTGGTTACCTGTTTTCGGACTATTGCAGATGTTTTCTATCTGTTGCACATGGCTATAAAGTTCCGAACTGCTTATGTATCCCCAAGCTCAAGGGTGTTTGGAAGGGGTGAACTTGTTATGGATCCAAAGGAGATTGCCAGGCGGTATTTGAAATCAGACTTCTTCATAGACCTGGTTGCAACATTGCCTCTTCCTCAGATTGTCATATGGTTCGTAATTCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCCCTTGTGCTAATTGTTTTGCTCCAATATGTTCCCAGATTATATCTGATTTTCCCGTTAAGTTCTCAGATTATTAAAGCCACAGGAGTTGTCACAAAAACTGCTTGGGCAGGGGCTGCATATAATCTCCTATTGTATATGTTAGCTAGTCATGTCTTAGGGGCATCATGGTATTTGTTGTCAATAGAACGGCATGCAACATGCTGGAAATCAGTTTGCAGAAAGGAGCTTGGCCCTATTAGATGCTTTCTTCGTTTCTTGGATTGTGGTACTTTGGACGATGATGATCGCAGGAAGTGGAATAATAGTACTTTTGTGTTTAGTCACTGTGATCCCAGCAAAGACATCAGTTTCAATTATGGAATATTTGGAGATGCGATAAAAAAGAATGTTGTATATTCAAAGTTTCTCGAGAAGTACTTCTATTGCTTATGGTGGGGCTTGCAGAACCTAAGTTCATATGGCCAGAGTTTGTCTACAAGCACATTTATTGGGGAAACTGCATTTGCCATACTTATCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAGACCTACTTGCAATCTATCACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGAAGAGACACAGAGGAATGGATGAGACACCGTCAACTACCTCAAGATCTGCGAGAGCGTGTTAGGCGGTTTGTCCAATACAAGTGGCTTGCTACTCGTGGAGTTGATGAAGAGTCAATTTTACGTGCCTTACCTACAGATTTACGTCGAGATATCCAGCGCCATCTATGCTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAGATGGATGATCAGCTACTTGATGCAATATGTGAGCGCCTAGTATCATCCTTGAGTACTCAAGGTACCTACATAGTTCGCGAGGGTGACCCAGTTACAGAGATGCTCTTTATTATCAGAGGGAGACTAGAGAGCTCAACTACGAATGGAGGCAGAACAGGTTTCTTCAATTCAATTACTTTACGGCCAGGCGATTTTTGCGGGGAGGAGTTGCTTGCATGGGCATTACTTCCCAAAATTACTCAGAACTTGCCCTCTTCAACAAGAACAGTAAGAGCCCTTGTTGAGGTGGAAGCCTTTGCACTGCGAGCAGAGGATCTCAAGTTTGTTGCAAATCAGTTTAGACGTCTCCATAGTAAGAAGCTGCAGCACACTTTCCGCTTCTACTCTCACCACTGGAGGACCTGGGCAGCCTGCTTCATTCAGGCTGCTTGGCGCCGGTACAAGAAGCGGATAATGGCAAAGAACCTCAGCATGCGAGAGTCATTCTCCTTTGCTGATGACGATGACCATGCAGATGATGAAGATGAAACCGAACAAGAGGATGAAGGGAGCTCCACAAAATCAAATTCTTCTCAGGCAAAGCAGCATCTAGGGGTCACCATACTGGCTTCAAGGTTTGCCAAAAACACAAGGCGAGGAGCTCAAAAGGTCAAGGATGTTGAAATGCCCAAGCTGCAGAAGCCTGAAGAGCCAGACTTCTCGATTGAGCCAGATGATTACTAG 2214 0.4417 MHMMNQMEFKKEKLVRFCSDEKQNLEVSWEKGESQPVERPVSYKVLPSLLNPEGRAGEKNRTYGTLSFGRFKVFPESHEPWRKRILDPGSDIFLQWNRVFLFSCLVALFVDPLFFYLPTVVGDGNSSCVKTDLNLGIVVTCFRTIADVFYLLHMAIKFRTAYVSPSSRVFGRGELVMDPKEIARRYLKSDFFIDLVATLPLPQIVIWFVIPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSVCRKELGPIRCFLRFLDCGTLDDDDRRKWNNSTFVFSHCDPSKDISFNYGIFGDAIKKNVVYSKFLEKYFYCLWWGLQNLSSYGQSLSTSTFIGETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQDLRERVRRFVQYKWLATRGVDEESILRALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKITQNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRIMAKNLSMRESFSFADDDDHADDEDETEQEDEGSSTKSNSSQAKQHLGVTILASRFAKNTRRGAQKVKDVEMPKLQKPEEPDFSIEPDDY* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0774 737 MobiDBLite consensus disorder prediction 681 695 - -
Vvi4g0774 737 FunFam Cyclic nucleotide-gated ion channel 1 492 610 - -
Vvi4g0774 737 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Vvi4g0774 737 Pfam Cyclic nucleotide-binding domain 517 605 IPR000595 -
Vvi4g0774 737 Gene3D - 101 420 - -
Vvi4g0774 737 MobiDBLite consensus disorder prediction 709 730 - -
Vvi4g0774 737 Gene3D Helix hairpin bin 422 485 - -
Vvi4g0774 737 SUPERFAMILY cAMP-binding domain-like 424 616 IPR018490 -
Vvi4g0774 737 ProSiteProfiles cAMP/cGMP binding motif profile. 494 575 IPR000595 -
Vvi4g0774 737 Pfam Ion transport protein 96 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g0774 737 MobiDBLite consensus disorder prediction 662 737 - -
Vvi4g0774 737 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 76 730 - -
Vvi4g0774 737 CDD CAP_ED 494 625 IPR000595 -
Vvi4g0774 737 SMART cnmp_10 494 625 IPR000595 -
Vvi4g0774 737 MobiDBLite consensus disorder prediction 664 678 - -
Vvi4g0774 737 Gene3D Jelly Rolls 492 612 IPR014710 -
Vvi4g0774 737 SUPERFAMILY Voltage-gated potassium channels 88 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0774 Vvi-Chr4 8890867 8897396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0774 16 733 Ion Channels AT2G24610 72.276 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0774 K05391 - vvi:100267557 1458.74