Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0769 ATGGTTTGTGAGATGGAGAATGATAACATTGAGGAAATGGATGTTGAGGTCCTCCACTCTATGTGGCCTGAAGACATTGGGAATGATGCTGGAAACCAATTCAATATGGATAGGCCAGGAGCAGATCAAGATATGTTGGAAGAGGTTAATATTGTTGAGGAGCCTTCTATAGTCGATTTTAAGCGCCTTTTAGAGCTAACCAATTACAGTGAGAAGGGATCCTCTCAGCTAGCATATCTCGTAAAGAATTGGGAGTATAAGCAGGCAAATGCTGTGCGCCTTCTTAAAGAAGAGCTCGACAATCTAAGCAGACAAAGGCAGGAAGTTGAGCTCAAGAAATTGGAGATATTGGAGGAGCATCGATTTGTTGAAGAAAGATATGGTGGTGACAAACGTCCAATTTCTATACTGGATGGCATTTATGATATATGGCAAGAAGTTCCACGGAGGAGAAATAGTGTTGTTGTTCAAAATAAAAGACTTGAAATAGATGCTGAATATGACACTGTCATATACTGGAAGCAGCGAGCTGTGCATTTAGAGAAATTGTTAGAGGCAAGTGTCCAGAGAGAGCATATGCTTATGGAGAAGGTGCAGGAAAGCATAAAAAGTCTGGAAAGGCAGTCATCCCCAGTGGAGGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCGTTCTACAGAATGCACCTGTTGTTATTGGCCATCAGGATAAAGAGCTGCGGTATCGTTTCATCTATAATCATTTCCCAAGTTTGCAAGAGGAGGACATCATAGGAAAAACAGACGTGGAGATTTTTACTGGTGCTGGTGTGAAGGAATCTCAGGAATTCAAGAAAGAGGTCTTGGAACGAGGATTGCCTGCAAAAAGGGAAATTACATTCGAGACTGAATTATTTGGTTCAAAGACATTTTTGATTTATGTGGAACCTGTCTTTAGCAAGGCAGGTGATACAATTGGTGTGAACTACATGGGGATGGATGTGACTGATCAGGTAAGGAAAAGAGAAAAGATGATGAAAATTCGAGAGGAGATAGCTGTACAAAAAGCCAAGGAAACAGAATTGAACAAAACAATTCATATAACAGAGGAGACAATGCGAGCAAAACAGATGCTAGCCACCATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGCATTGCTGAAATTCTTGCCACTACAAACCTTGACCGGCACCAACGACAACTATTGAATGTCATGCTATCTTCAGGAGATTTGGTCCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAAACTGCTGCTGCGTCATTGCAAAAGATACTGACCTTGGAAGGACATGTTGCGGATGACGTTCCTCTTGAGGTCACTGGAGATGTCCTAAGGATTCGACAAATTCTCACCAACTTGATTAGCAATGCAGTGAAGTTTACCCATGAAGGAAAAGTTGGAATAAACCTTTATGTGATACCAGAGCCATCCTCTGGAAATGGAGAAGGAGGTCCTCAAATGTTCATTGATGATCAGTCAACAGTTTCAGCAAATATACCTAAAGAAGAGAAATGTTTATCCCCATCTCAGTCTAGCTGCACTTCAAAAGGTTCTCATACTCAGAATCATGCACTTAATGATGAGCCTATAGACCCCATTAATCATGATGATTCAAAGCAGGAAGATAAAGAGAACTCTCACCCACTTGAGACAACTGTGTGGATACGATGTGATGTATATGACACTGGAATTGGAATACCAGAACATGCCTTACCTACTTTATTTAAAAAATACATGCAAGTCAGTGCAGATCATGCTCGCAAGTATGGTGGGACAGGATTGGGTTTGGCAATCTGCAAACAATTGGTTGAGCTGATGGGGGGGCATATGACTGTGTCCAGCAGAGAGCACTCTGGGTCTACTTTTACTTTTATTCTACCTTATAAGGTCTCACTGATAAGTGATCATTCGGATGATCCTGATGAACTCTCAGATATGGCTGATGACGATGCCTCAACCGATGATAAAAATGCTGGATTTTTTCAATTCCACCCACGCACTCTGGGTTCACTATTCTCTTCTGGTGGATCTGGCAGGACCCAAAAACTACCACCAAATAATATTGGGTATGATAGCTTACATAAACTCAATGGGCTCTCAGATGATTCCTATTCTTTCCCATTCAATAAGGTCACATCAAAAGAGATGACATCTCTTGAAGACACATGTTCAGTAGTTGATGCTGCAGAGACATTATCTGAACCTGAAAGTTTGTTAAGGCACAATGCAGAGCCTGATAATGATAATGCAGTTAGTAGAGGCAAAAAATGTCAAGATGAAGCCAATGGTCAAGTCCATAATCATAGTACGGGTTCAACTCATCACTCAAAGGTAAGCAAAGAAGTTGATGAAATGGGAAAAACAAGTGAGGCTCCAGAGATGTGTTTAAGGCTGGAGATATCTGAAAGAAGCTCTCAGTGCACTTCTAGCAGCAGTCCAGAAGAACCCAAATCAACATTAAAGCCTAAGATCCTTCTTGTAGAAGATAGTAAGATTAATGTAATGGTGACCCAGTCAATGATGAAGCAGTTAGGCCACACCATAGATGTTGTGAATAATGGAATTGAAGCCGTTCGTGCAGTTCAATGCCGTAGTTATGATCTCATTCTGATGGATGTATGTATGCCTGTGATGGATGGCCTTCAAGCTACAAGAATAATTCGATCTTTTGAAGAAACTGGCAATTGGGATGCTGCAGTAAAGGCTGGAATTGAGCCATCTACATGTTCTTCAGATTCATTACCAAATGGCCACGATTCTATGACAGTCACAAAGCGGGTCCCTATCATTGCGATGACAGCAAACGCCCTCTCAGAGAGTGCAGATGAGTGTTACGCGAATGGTATGGACTCATTTGTATCAAAGCCTGTCACATTTCAGAAGTTGACACAATGTCTTCAACAATACTTGACATGA 3039 0.4123 MVCEMENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEEVNIVEEPSIVDFKRLLELTNYSEKGSSQLAYLVKNWEYKQANAVRLLKEELDNLSRQRQEVELKKLEILEEHRFVEERYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWKQRAVHLEKLLEASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLPAKREITFETELFGSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINLYVIPEPSSGNGEGGPQMFIDDQSTVSANIPKEEKCLSPSQSSCTSKGSHTQNHALNDEPIDPINHDDSKQEDKENSHPLETTVWIRCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGHMTVSSREHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTLGSLFSSGGSGRTQKLPPNNIGYDSLHKLNGLSDDSYSFPFNKVTSKEMTSLEDTCSVVDAAETLSEPESLLRHNAEPDNDNAVSRGKKCQDEANGQVHNHSTGSTHHSKVSKEVDEMGKTSEAPEMCLRLEISERSSQCTSSSSPEEPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTIDVVNNGIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIEPSTCSSDSLPNGHDSMTVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQCLQQYLT* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0769 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 669 IPR003594 -
Vvi4g0769 1012 Coils Coil 92 119 - -
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 543 588 - -
Vvi4g0769 1012 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Vvi4g0769 1012 CDD REC_hyHK_CKI1_RcsC-like 865 1007 - -
Vvi4g0769 1012 Gene3D - 858 1012 - -
Vvi4g0769 1012 Gene3D - 359 436 - -
Vvi4g0769 1012 ProSiteProfiles Histidine kinase domain profile. 378 671 IPR005467 -
Vvi4g0769 1012 FunFam Putative histidine kinase 5 359 436 - -
Vvi4g0769 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Vvi4g0769 1012 Gene3D PAS domain 213 347 - -
Vvi4g0769 1012 SMART REC_2 863 1007 IPR001789 GO:0000160
Vvi4g0769 1012 Gene3D - 437 673 IPR036890 -
Vvi4g0769 1012 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1011 - -
Vvi4g0769 1012 CDD HATPase_EvgS-ArcB-TorS-like 487 668 - -
Vvi4g0769 1012 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Vvi4g0769 1012 SMART HKATPase_4 482 671 IPR003594 -
Vvi4g0769 1012 FunFam Histidine kinase 5 213 348 - -
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 775 831 - -
Vvi4g0769 1012 Pfam Response regulator receiver domain 865 932 IPR001789 GO:0000160
Vvi4g0769 1012 ProSiteProfiles Response regulatory domain profile. 864 1011 IPR001789 GO:0000160
Vvi4g0769 1012 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 570 588 - -
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 815 831 - -
Vvi4g0769 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 669 IPR036890 -
Vvi4g0769 1012 Coils Coil 188 208 - -
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 543 568 - -
Vvi4g0769 1012 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Vvi4g0769 1012 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Vvi4g0769 1012 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vvi4g0769 1012 FunFam Histidine kinase 5 857 1012 - -
Vvi4g0769 1012 MobiDBLite consensus disorder prediction 778 803 - -
Vvi4g0769 1012 SUPERFAMILY CheY-like 863 1011 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0769 Vvi-Chr4 8773641 8788445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0769 1 1011 Histidine Kinase Gene Family AT5G10720 58.202 0.0 1127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g0769 HATPase_c 1e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0769 - - vvi:100262281 1955.26