Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0768 ATGAAGATTTCAGGGGCCCTCCTTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCTCAACTATGGTGTTTGCACAGAGAGAGAATTGTGAGCAACTTGGCTCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATCCTCACTCAAAGTTACACCGCCAGCTTGACCTCAATGTTAACCGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTAAGAGCGAAAGGGGAGTATGTAGGTTACCAACAAGGCTCTTTCGTTCTCGGATTCTTGAAAAGGATGAACTTTGACGAATCCAAGTTTAGGATCTATAATTCTTCAGAAAAATTAGCTGAACTACTCTCGAAAGGGAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAACATACAAATATGATGGGTTCGGATTTGCCTTCCCAAGAGGTTCTCCTCTCGTACAGGATGTTTCAAGGGCAGTCTTAAATGTGACTGAGGGAGATGAAATGGTAAAGATTGAGAAAGAGTGGTTTGGGAAAAAAACTAGTTGTTCAGATGATAATGGAAGCTCAATTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGGGGTAATGGGCGAAGATTCAGTATCAACAAAGATTAAAACCTTGGCTACACGTTTTGATCAAAAAGACCTCAGCTCTCATACTTTCAGAATACCTGACCAGCCATACAGCGGTAGCACTGAGCCTATGGCTGCAGTTGGGGCCTCTCCATCAGTGACTAACTGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCATTAAGGATATTTCCCTCTCCGGAGAACAAGGGACCTTTTCTTCAGAGCACGTGGTGGTCAGAGCTCAACCACACCTAGTAGGCAATCATCGCCAGTGA 1038 0.4432 MKISGALLHIKQAPSSGSPSQLWCLHRERIVSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELRAKGEYVGYQQGSFVLGFLKRMNFDESKFRIYNSSEKLAELLSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPTYKYDGFGFAFPRGSPLVQDVSRAVLNVTEGDEMVKIEKEWFGKKTSCSDDNGSSISSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVGVMGEDSVSTKIKTLATRFDQKDLSSHTFRIPDQPYSGSTEPMAAVGASPSVTNCSPRPSTFSNQTIKDISLSGEQGTFSSEHVVVRAQPHLVGNHRQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0768 345 FunFam Uncharacterized protein 26 108 - -
Vvi4g0768 345 SUPERFAMILY Periplasmic binding protein-like II 49 201 - -
Vvi4g0768 345 Gene3D - 100 198 - -
Vvi4g0768 345 Pfam Ligand-gated ion channel 26 228 IPR001320 GO:0015276|GO:0016020
Vvi4g0768 345 Pfam Bacterial extracellular solute-binding proteins, family 3 49 197 IPR001638 -
Vvi4g0768 345 CDD GluR_Plant 50 195 - -
Vvi4g0768 345 MobiDBLite consensus disorder prediction 291 307 - -
Vvi4g0768 345 MobiDBLite consensus disorder prediction 278 307 - -
Vvi4g0768 345 Gene3D - 20 99 - -
Vvi4g0768 345 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 264 IPR015683 -
Vvi4g0768 345 FunFam Glutamate receptor 2.7 103 203 - -
Vvi4g0768 345 SMART GluR_14 28 197 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0768 Vvi-Chr4 8738287 8739489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0768 26 306 Ion Channels AT2G29110 51.943 1.25e-82 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0768 K05387 - vvi:100855255 550.436