Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0766 ATGGCACAGAACACAACAATCCCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGATTGGGAAGATGGGGTTGAGCTGCATCTCGATGGCCCTCTCAGACTTCTATGCCTCTCATGGCCACTACAAAACCAGGGTGGTTACAAAAATCAGAGACTCCAAAAGAGATGTTGGTGCAGCTGCAGCAGTTGTAGACCTCTTACAAAATGAAGAAGTGGAAGCCATAATAGGGCCCGGATCATCGATGCAGGCCAACTTCATGATTGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCTTCTCTTTCTTCGCTCCAGAGTCAATATTTTGTCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGACAATAGTCCAGGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGCAATGAAGTCGTACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCCATCGGCAACTGACGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGCTTACGCCTCTTGGCTCCCAGCTTTTTACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACTGACTTCTTGAGTACTTTGGACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATCCAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTATGGGCCTACGATGCTGCTTCTGCACTAGCCATGGCAGTTGAAAAACTTGGCGCGGGAAACTTCAGCTTCCAAAAGACCACCATTTCCAGAGATTCAACCAGTCTTGAGAGTATTAGAGTTTCCCCAATTGGCCCAAATATTCTCCATTCACTATTAGGTACTCGATTCAGAGGCCTTACCGGAGATTTTCAAATTATAGATGGGCAACTACACACATCAGCTTTCCAGATAGTTAATGTGATCGGTGAAGGGGAAAGAGGGGTTGGATTTTGGACAACAGAGAATGGAATTGTAAGACGATCGAATACTACTTCTAAGGCCAATCTAAGAGCCATTATGTGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGTTTCCTACCAATGGAAAGAAGTTGAAGATAGGGGTTCCAGAGAAAAAGGGTTTTTGTGAATTTGTAAAGGTGACGCGAGATCCTATCACTAATAAAACAAAGGCCACTGGTTACTCCATAGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTATGAGTACGTTCCCTTAAAGATACGTGATAGAAAGGCTGCTGGTAACAAAGATGAATTGTTTCAAGGACATGTTCAGAAGTGTGACGCTCTGGTGGGAGATATTACTATTCTAGCGAGCAGGTCCTTGTATGTAGACTTTACACTGCCTTACACCGAGTCTGGCGTATCAATGATCGTGCCGATCATCGATAACAGAAGTAAAATGGAAGAAACTGACCTACCGGTTGTCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGTTAGTAACTCCACACCTGATGGAGTGGTAA 1794 0.4192 MAQNTTIPVKVGVVLDLDTWIGKMGLSCISMALSDFYASHGHYKTRVVTKIRDSKRDVGAAAAVVDLLQNEEVEAIIGPGSSMQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFVRATLNDSAQVPAIRTIVQAFGWREVVLIYVDNEYGNEVVPSLTSALQEVDTHVTYRSAIHPSATDDQIVKELYKLMTMSTRVFIVHMLTPLGSQLFTKANEAGMMEEGYVWILTDGITDFLSTLDASAIDSMQGVLGVKPHVPRTKELESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAASALAMAVEKLGAGNFSFQKTTISRDSTSLESIRVSPIGPNILHSLLGTRFRGLTGDFQIIDGQLHTSAFQIVNVIGEGERGVGFWTTENGIVRRSNTTSKANLRAIMWPGESTSVPKGWVFPTNGKKLKIGVPEKKGFCEFVKVTRDPITNKTKATGYSIAIFDAVMATLPYAVPYEYVPLKIRDRKAAGNKDELFQGHVQKCDALVGDITILASRSLYVDFTLPYTESGVSMIVPIIDNRSKMEETDLPVVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVTPHLMEW* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0766 597 Pfam Receptor family ligand binding region 28 375 IPR001828 -
Vvi4g0766 597 CDD PBP1_GABAb_receptor_plant 10 394 IPR044440 -
Vvi4g0766 597 Gene3D - 326 426 - -
Vvi4g0766 597 FunFam Glutamate receptor 129 287 - -
Vvi4g0766 597 SUPERFAMILY Periplasmic binding protein-like I 8 420 IPR028082 -
Vvi4g0766 597 Coils Coil 588 588 - -
Vvi4g0766 597 SUPERFAMILY Periplasmic binding protein-like II 403 543 - -
Vvi4g0766 597 Pfam Bacterial extracellular solute-binding proteins, family 3 452 542 IPR001638 -
Vvi4g0766 597 Coils Coil 553 553 - -
Vvi4g0766 597 FunFam Glutamate receptor 427 545 - -
Vvi4g0766 597 Gene3D - 427 548 - -
Vvi4g0766 597 Gene3D - 125 289 - -
Vvi4g0766 597 FunFam Glutamate receptor 291 426 - -
Vvi4g0766 597 PANTHER OS06G0188250 PROTEIN 2 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0766 Vvi-Chr4 8723240 8727233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0766 2 540 Ion Channels AT5G27100 51.091 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0766 K05387 - vvi:100245134 1052.74