Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0764 ATGGCCATGTCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGTAAGATGGGTTTGAGCTGCATCACCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTATGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCACTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTTGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTCACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTCACAAGTTGATGACAATGCCAACCAGAGTTTTCATCGTACACATGTTTACACCTATAGGCCCACGACTTTTTGCCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTATGTATGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCGACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCCGCTTCTGGGTTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTCATATTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAAACTCCTCCAGTCACTATTAAATACTAGATTTAGAGGCCTCAGTGGGGATTTTCAAATTGTTAACAGACAACTACACTCATCAGCTTTTCAGGTAGTCAATGTGATAGGCAAGGGGGAAAGAGGGGTAGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAATTGAGAATAGGAGTACCAGTCGGCCAAGGTTATAGTGAATTTGTAAAGGTGACGCGAGATCCTAGCAGTAACACAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGCGATGGCAGCATTACCATATGTTGTTCCTTATGAGTACATTCCCTTCGAGGGGCCTGATGGCAATCAAGCCGGTGATTACAACGATTTGATATATCAAAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGATTCTGGGTTGTCAATGGTCGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCACTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTACTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGATGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGGCTTCAATGTTAACAGTTCAACAACTCAACCCGACTATCACCGATATAAATGAGCTCATAAAGAAGGGGGAGCCTGTAGGTTGCCAAAATGACTCTTTCGTTTGTGAATTCTTGATCGAGTCGATGAAATTTGATGAGTCCAAGCTTGTAAAGTACGAGTCCCCAGAAGAACTGGATGAATTATTTTCAAACAAGAGTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACAGCAGTCGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAACTGATGTTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTCGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTCTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTCGTAGCTCTCATCACATGCATCACCATGTTCCTTTATGAAAATAGAGATACCTTAATAAACTTGAATCCCCCATCTTCCATATGGGGAAAAATTAAAGCCATGGCAACACGCTTTGAAGACAAAGATCTCAGGTCCCATACCTTTAGAAATAGTGATCAACTTCCAGACAAGCAACATCAAGGCCATGGATGTAGTTATAGCCTCGCCAGCTACACCAACTGCCCTCCAAGTCCATCAAGCCTTTTGATCCCAACACACAACAATTTTACTTTCTTCGGTGAACAAGGAACGCCTTCTTCTGGACATGTTGATCCGGTCAGTTCAAATCAGCCGATGCATCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCATGAGCAAACAAGATGTCATGCCCCGTGA 2838 0.4316 MAMSQNTTIPVKVGVVLDMDTWLGKMGLSCITMALSDFYASHGHYKTRLVLEIRDSKRDVMGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYFDNEYGNGVIPYLTDALQEIHTRISYRSVIHPLATDDQILEELHKLMTMPTRVFIVHMFTPIGPRLFARANEIGMMEEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKREIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSHISRNSTDLDTVGVSLIGPKLLQSLLNTRFRGLSGDFQIVNRQLHSSAFQVVNVIGKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNEKKLRIGVPVGQGYSEFVKVTRDPSSNTTEVTGFSIAVFDAAMAALPYVVPYEYIPFEGPDGNQAGDYNDLIYQKYDAVVGDTTILANRSLYVDFTLPYTDSGLSMVVPTIDKRKKNAWVFLKPLTWDLWVTSFCFFVFTGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFTQKERIVSNLARIVMIIWFFVVLILTQSYTASLASMLTVQQLNPTITDINELIKKGEPVGCQNDSFVCEFLIESMKFDESKLVKYESPEELDELFSNKSSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVTDVSREVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALITCITMFLYENRDTLINLNPPSSIWGKIKAMATRFEDKDLRSHTFRNSDQLPDKQHQGHGCSYSLASYTNCPPSPSSLLIPTHNNFTFFGEQGTPSSGHVDPVSSNQPMHPHILFEYELANINHEQTRCHAP* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0764 945 PIRSF IGluLR_plant 1 879 IPR017103 -
Vvi4g0764 945 Gene3D - 45 370 - -
Vvi4g0764 945 CDD GluR_Plant 429 775 - -
Vvi4g0764 945 FunFam Glutamate receptor 545 675 - -
Vvi4g0764 945 SUPERFAMILY Periplasmic binding protein-like I 10 422 IPR028082 -
Vvi4g0764 945 Gene3D - 408 544 - -
Vvi4g0764 945 Pfam Ligand-gated ion channel 778 808 IPR001320 GO:0015276|GO:0016020
Vvi4g0764 945 Pfam Bacterial extracellular solute-binding proteins, family 3 455 777 IPR001638 -
Vvi4g0764 945 Gene3D - 126 393 - -
Vvi4g0764 945 FunFam Glutamate receptor 430 545 - -
Vvi4g0764 945 CDD PBP1_GABAb_receptor_plant 12 398 IPR044440 -
Vvi4g0764 945 Pfam Receptor family ligand binding region 30 378 IPR001828 -
Vvi4g0764 945 Gene3D - 723 783 - -
Vvi4g0764 945 FunFam Glutamate receptor 294 429 - -
Vvi4g0764 945 SUPERFAMILY Periplasmic binding protein-like II 407 777 - -
Vvi4g0764 945 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 853 IPR015683 -
Vvi4g0764 945 SMART GluR_14 430 777 IPR001320 GO:0015276|GO:0016020
Vvi4g0764 945 FunFam Glutamate receptor 2.7 683 783 - -
Vvi4g0764 945 Gene3D - 545 688 - -
Vvi4g0764 945 FunFam Glutamate receptor 132 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0764 Vvi-Chr4 8653870 8658091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0764 1 893 Ion Channels AT2G29110 52.049 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0764 K05387 - vvi:100245431 1889.39