Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0760 ATGAGAAACGACCTTGCCCAACAGGGGTTCGCCCTCTTCTTTCTCTCCCTATGGGTTCTCTTCATAGAAATGGGCATGGCGCAGAACACAACAATCCCAGTTAACGTGGGAGTGGTCCTTGACTTTGATACATCGTTTGGAAAGATGGGTCTGAGCTGCATCCCCATGGCCCTCTCAGATTTCTATGCCTCTCATGGTAACTACAAGACTAGGCTCGTTCTGAAGACTAGAGACTCCAGAAGAGATGTTGTTGGTGCAGCTGCAGCAGCTCTAGATCTAATACAAAATGAGGAAGTGCAAGCCATCATAGGGCCAGGGTCATCCATGCAGGCCAACTTCCTGATTGTCCTGGGACAAAAAGCCCAGGTTCCCATTATTTCATTTTCTGCATCAAGCCCTTCTCTTTCTTCCCTCAGGAGTCAATACTTTATCCGAGCCACTCTAAATGACTCAGCTCAAGTACCAGCAATAATAGCAATTTTCCAAGCCTTTGAGTGGAGAGAAGCTGTGCTTATTTACGTAGACAATGAGTATGGGGATGGAATTATACCTTATATGACCGATGCCTTGCAAGGGATTGATGTCCGTGTCACCTACCGTAGTGTAATTTCTCCATCAGCCACTGATGATCAAATTGGTGAAGAGCTTTACAAGCTGATGACAATGCAAACTAGAGTTTTCATTGTACACATGGTTACGCCTCTCGGCTCTCGCTTTTTTACCAAAGCAGATGAGATTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGCTAACTGACCTCTTGAGTACTTTGGATCCCTTAGTCATTGACTCAATGCAGGGGGTGCTGGGCATAAAGCCTCATGTTCCAAGAACAAAAGAGCTCGAAAATTTCAGAGTCCGATGGAAAAGGAAGTTCCAGCAAGATCATCCAAAAGATGAGACCTCTGAGCTGAACATTTTTGGATTATGGGCGTATGACGCTGCTTCTGCACTAGCCATGGCAGTTGAGAAAGTTGGGGCAACAAATTTAAGCTTCCAAAAGACTAATATTTCCAGCAATTCAACGGATCTTGACACCATTGGAGTCTCACAAATTGGTCCAAAGCTTCTCCAGTCACTGTTAAGTACGAAATTTAAAGGCCTCAGTGGAGATTTTCAAATTTTTGATGGTCAACTACACCCCACAGCCTTTCAGATAGTTAATGTGATTGGTAAAGGGGAAAGAGGGATAGGATTTTGGACTCCGAAAAATGGAATTATAAGAAGACTGAAATTCACAAACGCAAATTCAAACACATATTCCACTTCTAAGGACAATCTAGGAGCAATTGTATGGCCTGGAGAACCTACTTATTTCCCTAAAGGTTGGGTGCTTCCAGTAAACGAGAAGAAGTTGAAAATAGGGGTTCCAGTGAAGGATGGTTTTAGTGAATTTGTAAAAGTGACATGGGATCCTAACACTAATGCAACAAAGGTCACTGGGTACTGCATAGATGTCTTTGATGCGGTGATGGGTTCACTACCATATGCTGTTCCTTACGAGTACATTCCCTTTGGAACCCCAGACGGCAAGCCTGCCGGCAACTACAACGATTTGATATATCAAGTGTTTCTAAAGAAGTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAACTATGTAGATTTTACACTACCTTACACTGAATCTGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGCGCATGGATTTTCTTGAAGCCATTGACTTGGGACCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCCTTCACATCAAGTAGGCACCATCTTCTGGTTCTCCTTCTCAACTATGGTGTTTGCACAGAAGGAGAGAATTGTGAGCAACTTGGCTCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATCCTCACTCAAAGTTACACCGCCAGCTTGACCTCAATGTTAACCGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTAAGAGCGAAAGATGAGTATGTAGGTTACCAACAAGGCTCTTTCGTTCTCGGATTCTTGAAAAGGATGAACTTTGACGAATCCAAGTTTAGGATCTATAATTCTCCAGAAGAATTAGCTGAACTAATCTCGAAAGGGAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTGTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAACATACAAATTTGATGGGTTCGGATTTGCCTTCCCAAGAGGTTCTCCTCTCGTACAGGATGTTTCAAGGGCAGTCTTAAAGGTGACTGAGGGAGATGAAATGGTAAAGATTGAAAAAGAGTGGTTTGGGAAAAAAACTAGTTGTTCAGATGATAATGGAAGCTCACTTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGCCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGTGGTAATGGGCGAAGATTCAGTATCAGAAAAGATTAAAACCTTGGCTACACGTTTTGATCAAAAAGACCTCAGCTCTCATACTTTCAGAATACCTGACCAGCCATACAGCGGTAGCACTGAGCCTATGGCTGCAGTTGGAGCCTCTCCATCAGTGATTAACTGCTTGCCAAGGCCATCAACCCTTTCCAACCAAACCATTAATGAGATTTCCCTCTCCGGAGAACAAGGGACCTTTTCTTCAGAGCACGGTGGTGGTGGGAGCTCAACCACACCTAAATACTTAATGCATGATCATCCATTAAGTTCACTGACCGGTTCCCGCATTGATTGGTTTAGAGAGAAAATGGCAACTGAATTGTCCTACTTCAAAATTTTACCCATGTAG 2973 0.4342 MRNDLAQQGFALFFLSLWVLFIEMGMAQNTTIPVNVGVVLDFDTSFGKMGLSCIPMALSDFYASHGNYKTRLVLKTRDSRRDVVGAAAAALDLIQNEEVQAIIGPGSSMQANFLIVLGQKAQVPIISFSASSPSLSSLRSQYFIRATLNDSAQVPAIIAIFQAFEWREAVLIYVDNEYGDGIIPYMTDALQGIDVRVTYRSVISPSATDDQIGEELYKLMTMQTRVFIVHMVTPLGSRFFTKADEIGMMEEGYVWILTDGLTDLLSTLDPLVIDSMQGVLGIKPHVPRTKELENFRVRWKRKFQQDHPKDETSELNIFGLWAYDAASALAMAVEKVGATNLSFQKTNISSNSTDLDTIGVSQIGPKLLQSLLSTKFKGLSGDFQIFDGQLHPTAFQIVNVIGKGERGIGFWTPKNGIIRRLKFTNANSNTYSTSKDNLGAIVWPGEPTYFPKGWVLPVNEKKLKIGVPVKDGFSEFVKVTWDPNTNATKVTGYCIDVFDAVMGSLPYAVPYEYIPFGTPDGKPAGNYNDLIYQVFLKKYDAVVGDTTIVANRSNYVDFTLPYTESGVSMIVPIKDNKSKSAWIFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPPSHQVGTIFWFSFSTMVFAQKERIVSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELRAKDEYVGYQQGSFVLGFLKRMNFDESKFRIYNSPEELAELISKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPTYKFDGFGFAFPRGSPLVQDVSRAVLKVTEGDEMVKIEKEWFGKKTSCSDDNGSSLSSNNISLDSFWGLFLIAGATSSLALIIGIAMFLHKHRVVVMGEDSVSEKIKTLATRFDQKDLSSHTFRIPDQPYSGSTEPMAAVGASPSVINCLPRPSTLSNQTINEISLSGEQGTFSSEHGGGGSSTTPKYLMHDHPLSSLTGSRIDWFREKMATELSYFKILPM* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0760 990 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 876 IPR015683 -
Vvi4g0760 990 Pfam Bacterial extracellular solute-binding proteins, family 3 487 812 IPR001638 -
Vvi4g0760 990 SUPERFAMILY Periplasmic binding protein-like II 439 813 - -
Vvi4g0760 990 Gene3D - 714 818 - -
Vvi4g0760 990 Gene3D - 151 314 - -
Vvi4g0760 990 FunFam Glutamate receptor 581 711 - -
Vvi4g0760 990 FunFam Glutamate receptor 155 313 - -
Vvi4g0760 990 Gene3D - 317 461 - -
Vvi4g0760 990 MobiDBLite consensus disorder prediction 937 956 - -
Vvi4g0760 990 PIRSF IGluLR_plant 4 939 IPR017103 -
Vvi4g0760 990 SMART GluR_14 462 812 IPR001320 GO:0015276|GO:0016020
Vvi4g0760 990 SUPERFAMILY Periplasmic binding protein-like I 33 454 IPR028082 -
Vvi4g0760 990 Gene3D - 582 713 - -
Vvi4g0760 990 Gene3D - 462 581 - -
Vvi4g0760 990 FunFam Glutamate receptor 317 461 - -
Vvi4g0760 990 Pfam Receptor family ligand binding region 53 401 IPR001828 -
Vvi4g0760 990 CDD GluR_Plant 461 810 - -
Vvi4g0760 990 Pfam Ligand-gated ion channel 813 843 IPR001320 GO:0015276|GO:0016020
Vvi4g0760 990 CDD PBP1_GABAb_receptor_plant 35 421 IPR044440 -
Vvi4g0760 990 FunFam Glutamate receptor 2.7 718 818 - -
Vvi4g0760 990 FunFam Glutamate receptor 462 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0760 Vvi-Chr4 8600289 8620211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0760 10 932 Ion Channels AT2G29110 53.441 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0760 K05387 - vvi:100855255 1842.78