Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0759 ATGGCCATGGCACAGAACACAGCAATCCCAGTTAATGCGGGAGTGGTCCTTGACTTTGATACATCACTTGGAAAGATGGGTCTGAGCTGCATCCCCCTGGCCCTCTCAGATTTCTATGCCTCTCATGGTAACTACAAGGCTAGGCTCGTTCTGAAGACTAGAGACTCCAGAGATGTTGGTACAACTGCAGCAGGGGAAAGAGGGGTTGGATTTTGGACAACAGAGAATGGAATTGTAAGACGATCGAATACTACTTCTATGGCCAATCTAAGAGCCATTATGTGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGTTTCCTACCAATGGAAAGAAGTTGAAGATAGGGGTTCCAGAGAAAAAGGGTTTTTGTGAATTTGTAAAGGTGACGCGAGATCCTATCACTAATAAAACAAAGGCCACTGGTTACTGCATAGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTATGAGTACGTTCCCTTCAAGATGCCTGATAGAAAGGCTGCTAGTAACAAAGATGAATTGTTTCAAGGACATGTTCTGAAGTATGACGCTCTGGTGGGAGATTTTACTATTCTAGCGAGCAGGTCCTTGTATCTAGACTTTACATTGCCTTACACCGATTCTGGCGTATCAATGATCGTGCCGATCATCGATAACAGAAGTAAAAGAGCATGGGTCTTTTTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGCTTTGTGATTTGGACTCTTGAACATCGAACAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATGTTCTGGTTCTCCTTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGTGACTTGGCTCGGATCGCGGTGATCATATGGTTATTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAGTTCAACAGCTTAACCCAACTATCACTGATATAA 1026 0.4357 MAMAQNTAIPVNAGVVLDFDTSLGKMGLSCIPLALSDFYASHGNYKARLVLKTRDSRDVGTTAAGERGVGFWTTENGIVRRSNTTSMANLRAIMWPGESTSVPKGWVFPTNGKKLKIGVPEKKGFCEFVKVTRDPITNKTKATGYCIAIFDAVMATLPYAVPYEYVPFKMPDRKAASNKDELFQGHVLKYDALVGDFTILASRSLYLDFTLPYTDSGVSMIVPIIDNRSKRAWVFLKPLTWDLWVTSACFFVFIGFVIWTLEHRTNEDFRGPRSHQVGTMFWFSFSTLVFAQKERIVSDLARIAVIIWLFVVLILTQSYTASLTSMLTVQQFNSLTQLSLI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0759 341 SMART GluR_14 114 339 IPR001320 GO:0015276|GO:0016020
Vvi4g0759 341 Gene3D - 114 232 - -
Vvi4g0759 341 FunFam Glutamate receptor 114 232 - -
Vvi4g0759 341 Pfam Ligand-gated ion channel 241 334 IPR001320 GO:0015276|GO:0016020
Vvi4g0759 341 SUPERFAMILY Periplasmic binding protein-like II 88 249 - -
Vvi4g0759 341 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 338 IPR015683 -
Vvi4g0759 341 Gene3D - 233 341 - -
Vvi4g0759 341 FunFam Glutamate receptor 232 339 - -
Vvi4g0759 341 Gene3D - 44 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0759 Vvi-Chr4 8593516 8597987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0759 2 58 Ion Channels AT2G29120 42.105 1.19e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0759 K05387 - vvi:100245134 508.064