Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0757 ATGGCCATGTCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGTAAGATGGGTTTGAGCTGCATCACCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGCCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCAATCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGACTTTTTGGCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTTTGTATGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCGACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCCGCTTCTGGGTTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTCATATTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAAACTCCTCCAGTCACTATTAAATACTAGATTTAGAGGCCTCAGTGGGGATTTTCAAATTGTTAACAGACAACTACACTCATCAGCTTTTCAGGTAGTCAATGTGATACGCAAGGGGGAAAGAGGGGTAGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAATTGAGAATAGGAGTACCAGTCGGCCAAGGTTATAGTGAATTTGTAAAGGTGACGCGAGATCCTAGCAGTAACACAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGCGATGGTAGCATTACCATATGTTGTTCCTTATGAGTACATTCCCTTCGAGGGGCCTGATGGCAAACAAGCCGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGATTCTGGGTTGTCAATGGTCGTGCCCACTATAGATAAAAGAAAAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCACTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTACTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGATCGTGATGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGGCTTCAATGTTAACAGTTCAACAACTCAACCCGACTATCACTGATATAAATGAGCTCATAAAGAAGGGGGAGCCTGTAGGTTGCCAAAATGACTCTTTCGTTTGTGAATTCTTGATCGAGTCGATGAAATTTGATGAGTCCAAGCTTGTAAAATATGAGTCCCCAGAAGAACTGGATGAATTATTTTCAAACAAGAGTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACAGCAGTCGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTCGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCGAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATGCGTAGCTCTCACCACATGCATCACCATGTTCCTTTATGAAAATAGAGATATCTTAATAAACTTGAATCCCTCATCTTCCATATGGGGAAAAATTAAAGCCATGGCAACACGCTTTGAAGACAAAGATCTCAGGTCCCATACCTTTAGAAATAGTGATCTCAGTTCAAATCGGCCGATGCATCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCATGAGCAAACAAGATGTCATGCCCCGTGA 2691 0.4288 MAMSQNTTIPVKVGVVLDMDTWLGKMGLSCITMALSDFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSIRSPYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYLDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFGRANEIGMMEEGFVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKREIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSHISRNSTDLDTVGVSLIGPKLLQSLLNTRFRGLSGDFQIVNRQLHSSAFQVVNVIRKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNEKKLRIGVPVGQGYSEFVKVTRDPSSNTTEVTGFSIAVFDAAMVALPYVVPYEYIPFEGPDGKQAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYTDSGLSMVVPTIDKRKKNAWVFLKPLTWDLWVTSFCFFVFTGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFTQKERIVSNLARIVMIIWFFVVLILTQSYTASLASMLTVQQLNPTITDINELIKKGEPVGCQNDSFVCEFLIESMKFDESKLVKYESPEELDELFSNKSSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSREVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASCVALTTCITMFLYENRDILINLNPSSSIWGKIKAMATRFEDKDLRSHTFRNSDLSSNRPMHPHILFEYELANINHEQTRCHAP* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0757 896 Pfam Ligand-gated ion channel 782 812 IPR001320 GO:0015276|GO:0016020
Vvi4g0757 896 FunFam Glutamate receptor 294 429 - -
Vvi4g0757 896 SMART GluR_14 430 781 IPR001320 GO:0015276|GO:0016020
Vvi4g0757 896 Gene3D - 549 692 - -
Vvi4g0757 896 FunFam Glutamate receptor 430 549 - -
Vvi4g0757 896 Pfam Receptor family ligand binding region 30 378 IPR001828 -
Vvi4g0757 896 FunFam Glutamate receptor 549 679 - -
Vvi4g0757 896 PIRSF IGluLR_plant 1 888 IPR017103 -
Vvi4g0757 896 Gene3D - 340 434 - -
Vvi4g0757 896 FunFam Glutamate receptor 2.7 687 787 - -
Vvi4g0757 896 CDD PBP1_GABAb_receptor_plant 12 398 IPR044440 -
Vvi4g0757 896 CDD GluR_Plant 429 779 - -
Vvi4g0757 896 Gene3D - 128 293 - -
Vvi4g0757 896 SUPERFAMILY Periplasmic binding protein-like II 407 781 - -
Vvi4g0757 896 Pfam Bacterial extracellular solute-binding proteins, family 3 455 781 IPR001638 -
Vvi4g0757 896 FunFam Glutamate receptor 132 290 - -
Vvi4g0757 896 Gene3D - 727 787 - -
Vvi4g0757 896 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 853 IPR015683 -
Vvi4g0757 896 Gene3D - 439 548 - -
Vvi4g0757 896 SUPERFAMILY Periplasmic binding protein-like I 10 422 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0757 Vvi-Chr4 8508975 8513037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0757 2 865 Ion Channels AT2G29120 53.103 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0757 K05387 - vvi:100260624 1784.62