Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0756 ATGCCACAGAACACAAAGATTCCAGTTAAAGTGGGAGTGGTTCTCGACATGGATACCTGGCTAGGGAAGATGGGATTGAGCTGCATCTCCATGGCACTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCCGGAAATTAGAAACTCCAAACGAGATGTCGTTGGTGCAGCTGCAGCTGCTCTAGACTTGTTGCAAAATGAGGACGTTCAAGCCATCATAGGACCAGCATCTTCCATGCAGGCCAACTTCCTGATTGGTCTCGGAGACAAAACTCATGTGCCCATCATTTCATTTTCTGCAACAAGCCCTTCTCTTTCTTCACTTCAGAGTCAATATTTTATCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGGCAATGAGTATGGGAATGGCGTTATACCATATCTTACCGATGCCTTGCAAGAGATTGACACCCGTATCGCCTACAGGTACGTCATTCCTCCATTAGCCACTGATGATCAAATTGTCAAAGAACTTTACAAGCTGATGACAATGTCAACCAGAGTTTTCATTGTACACATGTCTACACCTCTTGGGCCTCGGCTTTTCACCAAAGCAAATAAGGTGGGAATGATGGATGAAGGCTATGTTTGGATACTGACTGATGGGATGGCTGATATGTTGAGTACTTTGGATGAGTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCTAGATCTAAAGAGCTTAAAAGTTTTGAAATCAGATGGAAAAGAAAAATCCAGCAAGAATATCCAACCAATGAAAGCTATGAGTTGAACATATTTGGCCTCTGGGCTTATGATGCTGCTTCTGGGTTAGCCATGGCAGTTGAACAACTTGGGACAACAAACTTCAGCTTCCAAAATTCTAATATTTCCAGAAATTCAACCGGTCTTGGGACTATACAAGTCTCCAAAACTGGTCCATATCTTCTCCAATCACTTCTAAGTACTAAATTCAGAGGCCTCAGTGGAGATTTTCAAATTGTTGATGGGCAACTACGTTCATCAGCCTTTCAGATAGTCAATGTGATCGGTAAAGGGGAAAGAGGGGTGGCACTTTGGACACCGGAGAATGGGATTGTAAGAAATTCAAATCCTACTTATAAGGCTGATCTAAGAACCATCATATGGCCGGGAGACTCTCCTTCGGTTCCTAAAGGTTGGGTGCTTCCCACAAACGGCATGAAGTCCTTGAGAATAGGAGTACCAGTGAAAGAGGGGTTTAGTGAATTTGTAAAGGTGACACGAGATCCTATCACTAACATTACAAAGGTCACTGGATACTGCATAGCTATCTTCGATGCTGTGATGGCAGCATTGCCATATTCTGTTCCTTACGAGTACATTCCGTTCGAGACCTCTGATGGCAAGCCTGCTGGCAATTACAATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTATCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTACACGGAATCTGGGGTGTCAATGATTGTGCCCGTCATAGATAAAAGAAGTAAAAATGCATGGGTTTTCTTGAAGCCACTGACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGTTTTGTGATTTGGGTTCTGGAACATCGTATAAATGAAGATTTTAGAGGACCTCGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACCATGGTGTTTGCCCAGAAGGAGAGAGTTGTGAGTAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTCGTGGTGCTGATTCTTACTCAAAGTTATACTGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTGAAGCCGACTATCACAGACATAAATGAGCTCATAAAGAATGGGGAGCGTGTGGGTTACCAGACGGGCTCTTTTGTTCATGAATTCTTGAAGTGGATGAAATTTGATGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGGGCTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCTGCTGCTTTTGAGGAAATCCCTTACATGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTTGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTCATACCTGATGTTTCAATGCAAGTCTTAAATGTGACTGAGGGAGCTAAAATGGTTCAATTTGAGAAAGCATGGTTTGGGCAGACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCATATGCATCACCACTTTCTTGTATGAAAATAGAGATACTTTAGTACACTTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCATGGCGACACGCTTTGATCACAAAGACCTCAGCTCGCATACTTTCAGGAAAAGTGAAATGGTAGATAGAAGTGGCATCAATGGTATGGATGCAGTTACAGCCTCGCCAGCTACCAACTGCCCCCCAAGTCCATCAAGCCTTTCCATCCAAACAGAGAGTAATTTTGCTTTCTTCAGAGACCAAGAAACGCCTTCTTCTGAATATGGCGATCCATTCAGTCCAAATAGGCAGACATCTCCACAGTAG 2781 0.4344 MPQNTKIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVPEIRNSKRDVVGAAAAALDLLQNEDVQAIIGPASSMQANFLIGLGDKTHVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVGNEYGNGVIPYLTDALQEIDTRIAYRYVIPPLATDDQIVKELYKLMTMSTRVFIVHMSTPLGPRLFTKANKVGMMDEGYVWILTDGMADMLSTLDESVIDSMQGVLGVKPHVPRSKELKSFEIRWKRKIQQEYPTNESYELNIFGLWAYDAASGLAMAVEQLGTTNFSFQNSNISRNSTGLGTIQVSKTGPYLLQSLLSTKFRGLSGDFQIVDGQLRSSAFQIVNVIGKGERGVALWTPENGIVRNSNPTYKADLRTIIWPGDSPSVPKGWVLPTNGMKSLRIGVPVKEGFSEFVKVTRDPITNITKVTGYCIAIFDAVMAALPYSVPYEYIPFETSDGKPAGNYNDLIYQVYLQKYDAVVGDTTIVANRSLYVDFTLPYTESGVSMIVPVIDKRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPRSNQVGTILWFSFSTMVFAQKERVVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIKNGERVGYQTGSFVHEFLKWMKFDETKLVIYESPEGLDELFSNRSSDGGIAAAFEEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLIPDVSMQVLNVTEGAKMVQFEKAWFGQTPSCPELTSSVSSNSIGLNSFWGLFLIAGVASFVALIICITTFLYENRDTLVHLDPPASVWRKIKAMATRFDHKDLSSHTFRKSEMVDRSGINGMDAVTASPATNCPPSPSSLSIQTESNFAFFRDQETPSSEYGDPFSPNRQTSPQ* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0756 926 Pfam Bacterial extracellular solute-binding proteins, family 3 456 779 IPR001638 -
Vvi4g0756 926 FunFam Glutamate receptor 548 678 - -
Vvi4g0756 926 Gene3D - 299 432 - -
Vvi4g0756 926 Pfam Ligand-gated ion channel 780 810 IPR001320 GO:0015276|GO:0016020
Vvi4g0756 926 PIRSF IGluLR_plant 1 911 IPR017103 -
Vvi4g0756 926 Gene3D - 126 291 - -
Vvi4g0756 926 Pfam Receptor family ligand binding region 28 376 IPR001828 -
Vvi4g0756 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 855 IPR015683 -
Vvi4g0756 926 MobiDBLite consensus disorder prediction 905 926 - -
Vvi4g0756 926 Gene3D - 437 547 - -
Vvi4g0756 926 FunFam Glutamate receptor 130 288 - -
Vvi4g0756 926 CDD PBP1_GABAb_receptor_plant 10 395 IPR044440 -
Vvi4g0756 926 Gene3D - 548 687 - -
Vvi4g0756 926 SUPERFAMILY Periplasmic binding protein-like II 406 779 - -
Vvi4g0756 926 SUPERFAMILY Periplasmic binding protein-like I 8 420 IPR028082 -
Vvi4g0756 926 CDD GluR_Plant 428 777 - -
Vvi4g0756 926 SMART GluR_14 429 779 IPR001320 GO:0015276|GO:0016020
Vvi4g0756 926 FunFam Glutamate receptor 292 427 - -
Vvi4g0756 926 FunFam Glutamate receptor 429 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0756 Vvi-Chr4 8484127 8488395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0756 1 889 Ion Channels AT2G29120 53.400 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0756 K05387 - vvi:100265839 1828.53