Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0755 ATGAGAAGGCACCCTACCCAACTCCTTGCCTCTCTCTTGTTCTTTCTCTTTCCCACGATTTTCTTCATAGAAAAGGGCATGGCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTGGACTTGGATACATGGGTTGGGAAGATGGGGTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGCCACTACAAAACCAGGGTGGTTACAAAAGTCAGAGATTCCAAAAGAGATGTTGTTGGTGCAGCTGCAGCAGCTGTTGACCTCTTGCAAAATGAGGAAGTGGAAGCCATAATAGGGCCGGGATCATCGATGCAGGCCAACTTCATGATCGGTCTTGGAAGTAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCCTCTCTTTCTTCGCTTCAGAGTCAATATTTTATCCGAGCTACCCTAAATGACTCAGCTCAAGTACCGGCAATTAGGGCAATAGTCCAGACCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTTGACAACGAGTATGGCAATGGAGTCATACCGTCTCTGACTAGTGCCTTCCTGGAGGTGGACGCCCATGTGACCTACTGGAGCCCCATTCATCCATCAGTAACTGACGATCAACTTGTTGAAGAACTTCACAAGTTGATGAGGATACCAACTAGAGTTTTCATTGTGCATATGCTTACGCCTCTTGGCTACCGGCTTTTTACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACCGACTTCTTGAGTACTTTGAACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATACAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTCTGGGCCTACGATGCTGCTTGTGCACTAGCCATGGCAGTTGAAAAACTTGGCGCGGGAAACTTCAGCCTCCAAAAGACTAACATTTCCAGAGATTCAACCGGTTTTGAGAGTATTAGAGTTTCCCCGGTTGGTCCAAATATTCTCCATTCACTATTAAGTACTCGATTTAGAGGCCTTAGCGGAGATTTTCAAATTGGAGATGGGCAACTACGCACATCAGCTTTCCATATAGTTAATGTGATTGGTGAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAATTGTAAGAAGATCGAATTCTACTTCTAAGGCCAATCTAAGAGCCATTACATGGCCAGGAGAATCTCCTTCTGTTCCTAAAGGTTGGGTGCTTCCTACCAACGGAAAGAAGTTGAAGATAGGAGTTCCAGTGAAGGAGGGTTTTAGTGAATTTGTGAAGGTGACGCGAGATCCTATCACTAATACAACAAAGATCACTGGTTACTCTATCGCTATCTTCGAAAACGTAATGGAAACATTACCATATGCTGTTCCTTACGAATACGTTCCCTTCGAGACACCTGATGGAAAGGCTGCTGGTAGCTATGATGAATTGATATCTCAAGTATATTTTCAGGTTAGCCATGACTTTTAG 1605 0.443 MRRHPTQLLASLLFFLFPTIFFIEKGMAQNTTIPVKVGVVLDLDTWVGKMGLSCISMALSDFYASHGHYKTRVVTKVRDSKRDVVGAAAAAVDLLQNEEVEAIIGPGSSMQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQTFGWREVVLIYVDNEYGNGVIPSLTSAFLEVDAHVTYWSPIHPSVTDDQLVEELHKLMRIPTRVFIVHMLTPLGYRLFTKANEAGMMEEGYVWILTDGITDFLSTLNASAIDSMQGVLGVKPHVPRTKELESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAACALAMAVEKLGAGNFSLQKTNISRDSTGFESIRVSPVGPNILHSLLSTRFRGLSGDFQIGDGQLRTSAFHIVNVIGEGERGVGFWTPENGIVRRSNSTSKANLRAITWPGESPSVPKGWVLPTNGKKLKIGVPVKEGFSEFVKVTRDPITNTTKITGYSIAIFENVMETLPYAVPYEYVPFETPDGKAAGSYDELISQVYFQVSHDF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0755 534 Gene3D - 365 453 - -
Vvi4g0755 534 SUPERFAMILY Periplasmic binding protein-like I 34 446 IPR028082 -
Vvi4g0755 534 FunFam Glutamate receptor 156 314 - -
Vvi4g0755 534 CDD PBP1_GABAb_receptor_plant 36 421 IPR044440 -
Vvi4g0755 534 SUPERFAMILY Periplasmic binding protein-like II 430 527 - -
Vvi4g0755 534 PANTHER OS06G0188250 PROTEIN 11 418 - -
Vvi4g0755 534 Gene3D - 152 316 - -
Vvi4g0755 534 Gene3D - 454 530 - -
Vvi4g0755 534 Pfam Receptor family ligand binding region 54 402 IPR001828 -
Vvi4g0755 534 FunFam Glutamate receptor 318 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0755 Vvi-Chr4 8474777 8478265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0755 1 528 Ion Channels AT5G27100 49.721 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0755 K05387 - vvi:100243515 1036.94