Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0743 ATGCAGGCCAACTTCATGATCGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCCTTTTCTGCAACAAGTCCCTCTCTTTCTTGGCTTCAGAGTCAATATTTTATTCGAGCTACCCTAAATGACTCAGCTCAAGTACCGGCAATAAGGGCAATAGTCCAGGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGCAATGGAGTCGTACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCCATCGGCAACTGACGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGCTTACACCTCTTGGCTCCCAGCTTTTCACCAAAGCAAATGAGGCTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATAACTGACTTCTTGAGTACTTTGGACGCTTCAGCCATTGATTCGATGCAAGGGGTGTTGGGCGTCAAGCCCCATGTTCCAAGAACCAAAAAGCTTGAAAGTTTTAAAATCAGATGGAAAAAGAAAATCCAAGAAGAATATCCAACCAATGAAATCTCTGAGCTGAATATTTTTGGACTCTGGGCCTACGATGCTGCTTCTGCACTAGCCATGGCATTTGAAAAACTTGGCGCGGGAAACTTCAGCCTCCAAAAGACTAACATTTCCAGAGATTCAACCGGTTTTGAGAGTATTAGAGTTTCCCCAGTTGGTCCAAATATTCTCCATTCACTATTGAGTACTCGATTTAGAGGCCTTAGCGGAGATTTTCAAATATTCGATGGGCAACTTCACTCGACAGCCTTTCAGATAGTTAATGTGATTGGTAAAGGGGAAAGAGGGGTAGGATTTTGGACTCCGAAAAATGGAATTATAAGAAGACTGAATTTCACAAACACATATTCCACTTCTAAGGACAACCTAGGAATAATTGTATGGCCTGGAGAACCTACTTATGTCCCTAAAGGTTGGGTGCTTCCAGTAAATGAGAAGTTGAAAATAGGAGTTCCAGTGAATGCTTTTAGTGAATTTGTAAATGTGACATGGGATCCCAAAACTAATGCCACAAAGGTCACTGGGTACTGCATAGATGTATTTGATGAGGTGATGCGTTCGCTACCATATGCTGTTCCTTACGAGTACATTCCCTTCGGAACCCCTGATGGCAAGTCTGCCGGTAGCTACAATGATTTGATATATCAAGTGTTTCTAAAGAATTATGATGCCGTGGTGGGAGATACTACAATTGTAGCGAACAGGTCCAAGTATGTAGATTTTACATTACCCTACACTGAATCTGGCGTATCAATGATCGTGCCCATCAAAGACAACAAAAGCAAAAGTGCATGGATTTTCTTGAAGCCATTGACTTGGGACCTCTGGGTGACTAGTGCGTGTTTCTTTGTTTTCATCGGCTTTGTAATTTGGGTTCTTGAACATCGAATAAATGAAGATTTCAGGGGCCCTCATTCACATCAAGCAGGCACCATCTTCTGGTTCTCCTTCACAACTATGATGTTTGCACAGAAGGAGAGAATTATGAGCAACTTGGCGCGGTTTGTGATGATCATATGGTTCTTTGTGGTGCTCATTCTTACTCAAAGTTACACCGCCAGCTTGACATCAATGTTAACTGTCCAACAGCTCCAGCCAACCGTTACAGACATAAAAGAGCTACAAGCGAAACGGGAGTATGTAGGTTACCAACAAGACTCTTTCGTTCTCGAATTCCTGAAAAGGATGAAGTTTGACGAATCCAAGTTAAGGATCTATAGTTCTCCAGAAAAATTAGCTGAACTATTCTCGAAAGGAAGTGCAAATGGAGGTATTGCTGCTGCCTTTGACGAGATACCTTACATGAAGCTCTTCATTGCACAGCATTGCTCGAAATATACCATGGTTCAACCAATATACAAATTTGATGGGTTCGGATTTGCCTTCCCAATAGGTTCTCCTCTGGTACCCGATGTTTCAAGGGCAGTCTTAATTGTGACTGAGGGAAATGAAATGGTAAGGATTGAGAAAAAGTGGTTTAGCGAAAAAACTAGTTGTTCAGATGATAATGGAAGCTTACTTTCTTCTAACAATATCAGCCTTGATAGCTTTTGGGGCCTTTTCCTCATTGCTGGAGTCACTTCATCTTTAGCTCTGATCATAGGTATTGCCATGTTCCTGCATAAACATAGAGTTGTAGTAATGGGCAAAGATTCGGCATCGACAAAGATTAAGACCTTGATGACACTTTTTGATCAAAAAGACCTCAGCTCTCATACTTTTAGAATAGCTGACCAGCCATACAGCGGTAGCAATGAGCCTATAGCTGCAGTTGGAGCCTCTCCCTCAGTGACTAACAGCTCGCCAAGGCCATCAACCTTTTCCAACCAAACCAATAATGATATTCCCCTCTCCGGAGAACAAGGAACCTCTTCTTAA 2487 0.4266 MQANFMIGLGSKARVPIISFSATSPSLSWLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVVPSLTSALQEVDTHVTYRSAIHPSATDDQIVKELYKLMTMSTRVFIVHMLTPLGSQLFTKANEAGMMEEGYVWILTDGITDFLSTLDASAIDSMQGVLGVKPHVPRTKKLESFKIRWKKKIQEEYPTNEISELNIFGLWAYDAASALAMAFEKLGAGNFSLQKTNISRDSTGFESIRVSPVGPNILHSLLSTRFRGLSGDFQIFDGQLHSTAFQIVNVIGKGERGVGFWTPKNGIIRRLNFTNTYSTSKDNLGIIVWPGEPTYVPKGWVLPVNEKLKIGVPVNAFSEFVNVTWDPKTNATKVTGYCIDVFDEVMRSLPYAVPYEYIPFGTPDGKSAGSYNDLIYQVFLKNYDAVVGDTTIVANRSKYVDFTLPYTESGVSMIVPIKDNKSKSAWIFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPHSHQAGTIFWFSFTTMMFAQKERIMSNLARFVMIIWFFVVLILTQSYTASLTSMLTVQQLQPTVTDIKELQAKREYVGYQQDSFVLEFLKRMKFDESKLRIYSSPEKLAELFSKGSANGGIAAAFDEIPYMKLFIAQHCSKYTMVQPIYKFDGFGFAFPIGSPLVPDVSRAVLIVTEGNEMVRIEKKWFSEKTSCSDDNGSLLSSNNISLDSFWGLFLIAGVTSSLALIIGIAMFLHKHRVVVMGKDSASTKIKTLMTLFDQKDLSSHTFRIADQPYSGSNEPIAAVGASPSVTNSSPRPSTFSNQTNNDIPLSGEQGTSS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0743 828 Gene3D - 255 349 - -
Vvi4g0743 828 MobiDBLite consensus disorder prediction 788 828 - -
Vvi4g0743 828 FunFam Glutamate receptor 467 597 - -
Vvi4g0743 828 CDD PBP1_GABAb_receptor_plant 1 313 IPR044440 -
Vvi4g0743 828 FunFam Glutamate receptor 209 349 - -
Vvi4g0743 828 SUPERFAMILY Periplasmic binding protein-like I 9 342 IPR028082 -
Vvi4g0743 828 CDD GluR_Plant 349 696 - -
Vvi4g0743 828 FunFam Glutamate receptor 2.7 604 704 - -
Vvi4g0743 828 FunFam Glutamate receptor 349 467 - -
Vvi4g0743 828 Gene3D - 468 608 - -
Vvi4g0743 828 Gene3D - 640 704 - -
Vvi4g0743 828 Pfam Receptor family ligand binding region 2 293 IPR001828 -
Vvi4g0743 828 Gene3D - 43 207 - -
Vvi4g0743 828 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 761 IPR015683 -
Vvi4g0743 828 FunFam Glutamate receptor 47 205 - -
Vvi4g0743 828 Pfam Bacterial extracellular solute-binding proteins, family 3 372 697 IPR001638 -
Vvi4g0743 828 PIRSF IGluLR_plant 1 825 IPR017103 -
Vvi4g0743 828 SUPERFAMILY Periplasmic binding protein-like II 328 698 - -
Vvi4g0743 828 Gene3D - 350 467 - -
Vvi4g0743 828 SMART GluR_14 351 698 IPR001320 GO:0015276|GO:0016020
Vvi4g0743 828 MobiDBLite consensus disorder prediction 792 828 - -
Vvi4g0743 828 Pfam Ligand-gated ion channel 698 729 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0743 Vvi-Chr4 8361423 8364248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0743 1 809 Ion Channels AT2G29120 52.270 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0743 K05387 - vvi:100855255 1385.16