Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0742 ATGGGCTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGCTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGTCATCATAGGACCAGCAACCTCCATGCAGGCCAATTTTGTGATTTATCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCAGAGTCGATATTTTGTCCGAGCCACATTGAATGACTCAGCTCAAGTACCAGCCATAAGAGCTATTGTCCAAGCCTTTGGGTGGAGACAAGTTCTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTCTACCTTATCTTACTGATCCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGTCAACCAGAGAGTTTTCATTTACCTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAATTGAAAAACTTGGGGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGTTCATCAGCTTTTCAGGTAGTCAATGTGATCGGAAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCCACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATTACCCTCCGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATCGAAGTACCAGTCACCAAGGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGATGGAGGTCACTGGATTTTCCATAGCAGTCTTTGAGAACAGATATGACCAATAA 1233 0.4331 MGLSCISMALSDFYASHGHYKTRLALEIRDSKRDVVGAAAAALDLLQNEEVQVIIGPATSMQANFVIYLGDKAHVPIISFSATSPSLSSLQSRYFVRATLNDSAQVPAIRAIVQAFGWRQVLLIYLDNEYGNGVLPYLTDPLQEIDTRISYRSVIHPLATDDQILEELYKLMTMSTREFSFTLDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAIEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGELPSVPKGWVLPTNEKKMRIEVPVTKGSGKFVKVTRDPSTNAMEVTGFSIAVFENRYDQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0742 410 FunFam Glutamate receptor 232 367 - -
Vvi4g0742 410 Gene3D - 199 308 - -
Vvi4g0742 410 Gene3D - 166 331 - -
Vvi4g0742 410 Gene3D - 1 161 - -
Vvi4g0742 410 Pfam Receptor family ligand binding region 187 316 IPR001828 -
Vvi4g0742 410 Pfam Receptor family ligand binding region 5 177 IPR001828 -
Vvi4g0742 410 CDD PBP1_GABAb_receptor_plant 1 336 IPR044440 -
Vvi4g0742 410 PANTHER OS06G0188250 PROTEIN 1 180 - -
Vvi4g0742 410 SUPERFAMILY Periplasmic binding protein-like I 6 360 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0742 Vvi-Chr4 8358445 8360989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0742 1 405 Ion Channels AT2G24720 47.672 1.85e-141 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0742 K05387 - vvi:100241793 718.768