Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0738 ATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTCCGGAGTCCATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGAGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTAATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGTTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATATTCACAGAAATTCAACCGATCTTGATACTGGCCTCAGTGGACACTTTCAAATTTTTAACGGCCAACTACGGTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTCGGATTTTGGACACCAGAGAATGGAACTGTAAGAAATTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGAAGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGCGAATTCGTAAACGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCGGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGAAGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCGTAGATAGAAGAGCAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAATAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAATAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTTCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCAATGAAATTTGATGAGTCCAAGCTTGTAATCTATAAGTCACCAGAAGAACTGGATGAGTTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAACGTACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAAGGTTCACCCCTTGTAGCCGATGCTTCAAGGGAAGTCTTAAACGTGACAGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTGAATAGCTTTTGGGGTCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCCTTAATAAACTTGAATTCCCCATCTTCAATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGGTCCCATACTTTTAGAGAAAGTGATCAACTTCAAGACGAGCAACATCAATGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGACCCTTTTGATCCCAACACACAATAATTCTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCTGTCCAAATCGGCCGATGTCTCCCCATATAATGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACAGCCTATGGTCATGTCACGGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGCGAAGATGGGCTTGAGATGCATCTCCATGGCCCTCTCAGAGTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATTGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCCCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCAAGCCATGGCAGTTGAAAAACATGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATACTCACAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAGTCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGTCAACTACGTTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCCACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCCGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAACGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACCGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAGAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAACCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTTAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAAGGGGAGCGTGTAGGTTGCGAACATGGCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAAACTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCGAGGCAAGTCTTAAACGTGACCGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAACTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGACGACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGTGGCATCAAAGCCATGGATGCAGCTACACCAACTTCGCTCCAAGTCCATCGACCCTTTTGATCCCAACACACAATAATTCTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGCCGGTCCAAATCGGCCAATGTCTCCATATATAATGTTTGAATATGAGCTTGCTAATATAAATCACGAGTAA 5283 0.4297 MQANFVIGLGDKAHVPIISFSATSPSLSSLRSPYFVRATLNDSAQVPAIRAIVQAFEWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWVYDAASGLAMAVEKLGPTNFSFQKSNIHRNSTDLDTGLSGHFQIFNGQLRSSAFQVVNVIGKGERGVGFWTPENGTVRNLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKKRIGVPVTKGFGEFVNVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYEAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIVDRRAKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRINKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESKLVIYKSPEELDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADASREVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRESDQLQDEQHQCHGCSYTNFPPSPSTLLIPTHNNSAFFGEQGTPSSGHADPVCPNRPMSPHIMFEYELANINHEQTRQPMVMSRNTTIPVKVGVVLDMDTWLAKMGLRCISMALSEFYASHGHYKTRLVLEIRDSKRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGQAMAVEKHGPTNFSFQKSNTHRNSTDLDTVGVSQIGPSLLQSLLSTRFKGLSGHFQIFNSQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTNGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDRRRKNAWVFLKPLTWDLWVTTSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVSNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCEHGSFVHEFLIESMKFDESNLVNYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTNSVSSNSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRKSDQLQDKWHQSHGCSYTNFAPSPSTLLIPTHNNSAFFGEQGTPSSGHADPAGPNRPMSPYIMFEYELANINHE* 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0738 1760 SUPERFAMILY Periplasmic binding protein-like II 1239 1604 - -
Vvi4g0738 1760 CDD GluR_Plant 324 670 - -
Vvi4g0738 1760 Gene3D - 961 1126 - -
Vvi4g0738 1760 Gene3D - 43 208 - -
Vvi4g0738 1760 FunFam Glutamate receptor 1127 1262 - -
Vvi4g0738 1760 CDD PBP1_GABAb_receptor_plant 1 293 IPR044440 -
Vvi4g0738 1760 SUPERFAMILY Periplasmic binding protein-like I 7 317 IPR028082 -
Vvi4g0738 1760 FunFam Glutamate receptor 965 1123 - -
Vvi4g0738 1760 Pfam Bacterial extracellular solute-binding proteins, family 3 1288 1604 IPR001638 -
Vvi4g0738 1760 CDD PBP1_GABAb_receptor_plant 845 1231 IPR044440 -
Vvi4g0738 1760 CDD GluR_Plant 1262 1602 - -
Vvi4g0738 1760 Pfam Bacterial extracellular solute-binding proteins, family 3 350 672 IPR001638 -
Vvi4g0738 1760 SUPERFAMILY Periplasmic binding protein-like I 843 1255 IPR028082 -
Vvi4g0738 1760 FunFam Glutamate receptor 47 205 - -
Vvi4g0738 1760 Gene3D - 325 444 - -
Vvi4g0738 1760 Gene3D - 1263 1375 - -
Vvi4g0738 1760 FunFam Glutamate receptor 1376 1506 - -
Vvi4g0738 1760 FunFam Glutamate receptor 209 324 - -
Vvi4g0738 1760 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 844 1683 IPR015683 -
Vvi4g0738 1760 Pfam Ligand-gated ion channel 1605 1635 IPR001320 GO:0015276|GO:0016020
Vvi4g0738 1760 Gene3D - 209 324 - -
Vvi4g0738 1760 Gene3D - 1169 1262 - -
Vvi4g0738 1760 FunFam Glutamate receptor 444 574 - -
Vvi4g0738 1760 Gene3D - 445 587 - -
Vvi4g0738 1760 Gene3D - 1376 1519 - -
Vvi4g0738 1760 Pfam Ligand-gated ion channel 673 703 IPR001320 GO:0015276|GO:0016020
Vvi4g0738 1760 FunFam Glutamate receptor 1263 1376 - -
Vvi4g0738 1760 FunFam Glutamate receptor 325 444 - -
Vvi4g0738 1760 SMART GluR_14 327 672 IPR001320 GO:0015276|GO:0016020
Vvi4g0738 1760 SMART GluR_14 1265 1604 IPR001320 GO:0015276|GO:0016020
Vvi4g0738 1760 SUPERFAMILY Periplasmic binding protein-like II 301 672 - -
Vvi4g0738 1760 Pfam Receptor family ligand binding region 2 273 IPR001828 -
Vvi4g0738 1760 Pfam Receptor family ligand binding region 864 1211 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0738 Vvi-Chr4 8256197 8269048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0738 1 756 Ion Channels AT2G29120 52.941 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0738 K05387 - vvi:100241108 1839.7