Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0733 ATGCTTACACCTCTAGGCTCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGCGTGAAGCCTCATAATATCCAAACAAGAAAATCACTTTATATTGATTTTCTGGATTACACAGCCAGCTTGACTTCAATGTTGAGAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTGATAAAGAAAGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCAAATGGATGAAATTTGATGAGTCCAAGCTTGTAATCTATGAGTCACCAGAAGAACTGGATGAATTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGACTTTCCTCCCAAAATATTGCTCCAAATACACTGCAGTGGGACCAAGATACAAGTTTGATGGGTTTAGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGAAAGTCTTAAACGTGACCGAGGGAGCCAAAATGCTACAATTTGAGAAGGCGTGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAGACAGCATCGGGCTTAATAGATTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTCTCATCACATGCATCATCACATTCCTTTATGAAAATAGAGACGCATTAATAAACTTGAATCCCTCATCTTCCATATGGAGAAAATTTAAAGCCATGGTGACACGCTTTGACCACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGAGGCATCAAATCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGATCCCAACCGCCAACAATTTTGCTTTCTTCGGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCGGATGTCTCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAACGAAGACCGCATGTAATTGA 1125 0.416 MLTPLGSRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHNIQTRKSLYIDFLDYTASLTSMLRVQQLNPTITDINELIKKGERVGCQHASFVHEFLIKWMKFDESKLVIYESPEELDELFSKGGIAAAFDEIPYMKTFLPKYCSKYTAVGPRYKFDGFRFVFPKGSPLVADVSRKVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSDSIGLNRFWGLFLIAGVASFVALITCIITFLYENRDALINLNPSSSIWRKFKAMVTRFDHKDLRSHTFRKSDQLQDKRHQIHGCSYTNFPPSPSSLLIPTANNFAFFGEQGTPSSGHADPVGPNRRMSPHILFEYELANINHEQTKTACN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0733 374 Gene3D - 86 173 - -
Vvi4g0733 374 Pfam Bacterial extracellular solute-binding proteins, family 3 60 211 IPR001638 -
Vvi4g0733 374 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 43 IPR015683 -
Vvi4g0733 374 SMART GluR_14 13 211 IPR001320 GO:0015276|GO:0016020
Vvi4g0733 374 Pfam Ligand-gated ion channel 212 242 IPR001320 GO:0015276|GO:0016020
Vvi4g0733 374 SUPERFAMILY Periplasmic binding protein-like II 60 215 - -
Vvi4g0733 374 Gene3D - 1 85 - -
Vvi4g0733 374 SUPERFAMILY Periplasmic binding protein-like I 5 68 IPR028082 -
Vvi4g0733 374 Pfam Receptor family ligand binding region 6 61 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0733 Vvi-Chr4 8199936 8201310 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0733 1 55 Ion Channels AT2G29110 44.643 1.00e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0733 K05387 - vvi:100241793 595.119