Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0730 ATGAGAAAGAACCTTAGCCAACTCCTTACCTCTCTCTTGTTCGTTCTCTTTCCCACGATTTTCTTCATTGAAATGAGCATGGCACAGAACACAACAATACCGGTTAAAGTGGGAGTGGTTCTTGACATGGACACATGGCTGGGGAAGATGGGTTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAAAAGGGATGTTATGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCCGCAACTAGTCCTTCCCTTTCTTCGCTGCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATGAGGGCAATTGTCCAAGCCTTTGGGTGGAGAGAAGTTGTGCTCATTTACGTGGACAACGAGTATGGAAATGGAGTGATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACCGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACGAAGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGAAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTGATATCTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGCTGGGCGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATTCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATACTCACAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAGTCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTCAGTGGACACTTTCAAATTTTGAACAGGCAACTACGTTCATCAGCTTTTCAGGTGGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCTACTTCCAAGGCCAATCTAGGAACAATCGTATGGCCAGGAGAATCTCCCTCCGTTCCTAAAGGTTGGGTCCTTCCCACCAATAAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGTGAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCAACGGAGGTCACTGGATTTTCCATAGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACAGTCCCTTCCAGACGCCCGATGGCGATCCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCGTACACATAA 1668 0.4466 MRKNLSQLLTSLLFVLFPTIFFIEMSMAQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSKRDVMGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAMRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTKPTRVFIVHMLTPLGPRLFTRANEIGMMKEGYVWILTDGLTDILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGPTNFSFQKSNTHRNSTDLDTVGVSQIGPSLLQSLLSTRFKGLSGHFQILNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKANLGTIVWPGESPSVPKGWVLPTNKKKMRIGVPVTKGFGEFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYSPFQTPDGDPAGDYNDLIYQVYLQKYDAVVGDTTILANRSLYVDFTLPYT* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0730 555 CDD PBP1_GABAb_receptor_plant 36 422 IPR044440 -
Vvi4g0730 555 SUPERFAMILY Periplasmic binding protein-like I 34 446 IPR028082 -
Vvi4g0730 555 FunFam Glutamate receptor 318 453 - -
Vvi4g0730 555 PANTHER OS06G0188250 PROTEIN 10 417 - -
Vvi4g0730 555 Pfam Receptor family ligand binding region 54 402 IPR001828 -
Vvi4g0730 555 Gene3D - 354 453 - -
Vvi4g0730 555 Gene3D - 152 317 - -
Vvi4g0730 555 SUPERFAMILY Periplasmic binding protein-like II 430 555 - -
Vvi4g0730 555 FunFam Glutamate receptor 156 314 - -
Vvi4g0730 555 Gene3D - 454 555 - -
Vvi4g0730 555 FunFam Glutamate receptor 454 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0730 Vvi-Chr4 8180570 8183352 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0730 24 554 Ion Channels AT2G24720 53.789 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0730 K05387 - vvi:100253755 1085.09