Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0728 ATGGTCATGTCACGGAATACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGCTTGAGCTGCATCTCCATGGCGCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAATAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCAACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATCGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTCGGACAACGAGTACGGAAATGGAGTTATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACCGATGATCAAATCCTTGAAGAGCTTTACAAGTTGATGACAATGCCAATCAGAGTTTTCATTGTACACATGTTTACACCTCTAGGCCCACGGCTTTTCACCAGAGCGTATGAGATTGGAATGATGGAAGAAGGTTTTGTTTGGATACTAACTGATGGACTAACTGATATCTTGAGTGCTTTGGATGACTCGGTCATTGATTCGATGCAAGGAGTGTTGGGTGTAAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGAGCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAAATTCAACTGATCTTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTTAGTGGACACTTTCAAATTTTTAACAGGCAACTACGCTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTACATTCGACTTCCAAGACCAATCTAGGAACAATCGTATGGCCAGGAGAATCACCCTCTGTTCCTAAAGGTTGGGTCCTTCCAACCAATGAGAAGAAGATGAGAATAGGAGTACCAGTCACCAAGGGTTCTGGTAAATTCGTAAAGGTGACACGAGATCCTAGCACTAACGCGACGGAGGTCACTGGATTTTCCATTGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATGGTGAACCAGCGGGTGATTACAACGATTTGATATATCAAGTATATCTCAAGAAGTATGATGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCGTACACAGAATCTGGGGTGTCAATGATCGTGCCCATCATAGATAAAAGAAGAAAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTCTTGTTTCTTTGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAAGGAGAGAATTGTCAACAACTTGGCTCGGTTTGTGGTGATCATATGGCTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTGACAGTTCAACAGCTCAACCCAACCATCACCGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAACATGCCTCTTTCGTTCATGAATTCTTGATCGAATCGATGAAATTTGATGAGTCCAACCTTGTAATCTATGAGTCAACAGAAGTACTGGATGAATTATTTTCAAAAGGTAGAATTGCTGCCGCATTTGATGAAATCCCTTACATTAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTGGACCAACATACAAGTTTGATGGGTTTGGATTTGTGTTTCCAAAGGGTTCACCCCTTGTAGCTGATGTTTCAAGGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGCTACAATTTGAGAAGGCATGGTTTGGGCAAACACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAGACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAATCGCTTCATTTGTAGCTCTCATCACATGCATCACCACATTCCTTTATGAAAATAGAGATGCATTAATAAACTTGAATTCCCCATCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGATGACAAAGATCTTAGGTCCCATACTTTTAGAAAAAGTGATCAACTTCAAGACAAGCGGCATCAAAGCCATGGATGCAGCTACACCAACTTCCCTCCAAGTCCATCGAGCCTTTTGCTCCCAACACACAACAATTTTTCTTTCTTCAGAGAACAAGGAACACCTTCTTCTGGACATGCTGATCCAGTCGGTCCAAATCGGCCCATGTCTCCACATATATTGTTTGGATATGAGCTTGCTAATATAAATCACGAGCAAACAAGACCGCTTGCCTTTGGATGGAGAGAAGTTGTGCTTATCTATGAGGACAACGAGTATGGGAATGGAGTTATACTATCTCTGACTATTGCCATGCAGGAGGTGGACACACATGTGACTTATCGAAGCTTCATTCATCCGTTGGCAACTAATGATCAAATCGTTAAAGAACTTTACAAGTTAATGATGATGTCAACTAGGGTTTCCATTATGCATATGCTTAAGCCTCTTGGCTCCCAACTTTTACCTAAGCAAATGAGGTTGGAATGA 3072 0.4281 MVMSRNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSNRDVVGAAAAALDLLQNEEVQAIIGPASSMQANFVIGLGDKAHVPIISFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYSDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPIRVFIVHMFTPLGPRLFTRAYEIGMMEEGFVWILTDGLTDILSALDDSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGATNFSFQKSNTSRNSTDLDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLRSSAFQVVNVIGKGERGVGFWTPENGTVRKLHSTSKTNLGTIVWPGESPSVPKGWVLPTNEKKMRIGVPVTKGSGKFVKVTRDPSTNATEVTGFSIAVFDAVMAALPYAVPYEYIPFQTPDGEPAGDYNDLIYQVYLKKYDAVVGDTTILANRSLYVDFTLPYTESGVSMIVPIIDKRRKNAWVFLKPLTWDLWVTSSCFFVFIGFVIWVLEHRVNKDFRGPRSHQVGTIFWFSFSTLVFAQKERIVNNLARFVVIIWLFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQHASFVHEFLIESMKFDESNLVIYESTEVLDELFSKGRIAAAFDEIPYIKLFLAKYCSKYTAVGPTYKFDGFGFVFPKGSPLVADVSRQVLNVTEGAKMLQFEKAWFGQTPSCPELTSSVSSDSIGLNSFWGLFLIAGIASFVALITCITTFLYENRDALINLNSPSSIWRKIKAMVTRFDDKDLRSHTFRKSDQLQDKRHQSHGCSYTNFPPSPSSLLLPTHNNFSFFREQGTPSSGHADPVGPNRPMSPHILFGYELANINHEQTRPLAFGWREVVLIYEDNEYGNGVILSLTIAMQEVDTHVTYRSFIHPLATNDQIVKELYKLMMMSTRVSIMHMLKPLGSQLLPKQMRLE* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0728 1023 Pfam Ligand-gated ion channel 778 808 IPR001320 GO:0015276|GO:0016020
Vvi4g0728 1023 Gene3D - 437 548 - -
Vvi4g0728 1023 Gene3D - 128 293 - -
Vvi4g0728 1023 Gene3D - 938 1023 - -
Vvi4g0728 1023 Pfam Bacterial extracellular solute-binding proteins, family 3 455 777 IPR001638 -
Vvi4g0728 1023 SMART GluR_14 432 777 IPR001320 GO:0015276|GO:0016020
Vvi4g0728 1023 CDD GluR_Plant 429 775 - -
Vvi4g0728 1023 FunFam Glutamate receptor 132 290 - -
Vvi4g0728 1023 FunFam Glutamate receptor 430 549 - -
Vvi4g0728 1023 Pfam Receptor family ligand binding region 939 1018 IPR001828 -
Vvi4g0728 1023 Pfam Receptor family ligand binding region 30 378 IPR001828 -
Vvi4g0728 1023 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 851 IPR015683 -
Vvi4g0728 1023 FunFam Glutamate receptor 549 679 - -
Vvi4g0728 1023 Gene3D - 549 692 - -
Vvi4g0728 1023 Gene3D - 719 783 - -
Vvi4g0728 1023 SUPERFAMILY Periplasmic binding protein-like I 10 422 IPR028082 -
Vvi4g0728 1023 CDD PBP1_GABAb_receptor_plant 12 398 IPR044440 -
Vvi4g0728 1023 FunFam Glutamate receptor 294 429 - -
Vvi4g0728 1023 SUPERFAMILY Periplasmic binding protein-like II 406 777 - -
Vvi4g0728 1023 SUPERFAMILY Periplasmic binding protein-like I 939 1016 IPR028082 -
Vvi4g0728 1023 Gene3D - 301 434 - -
Vvi4g0728 1023 PIRSF IGluLR_plant 1 880 IPR017103 -
Vvi4g0728 1023 PIRSF IGluLR_plant 938 1023 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0728 Vvi-Chr4 8149518 8157053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0728 2 861 Ion Channels AT2G29120 53.695 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0728 K05387 - vvi:100241793 1811.58