Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0727 ATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATAGCGATCCAGCAGAGGAGAGAATCGTGAGTAACTTGACTCGGTTTGGGGTGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTGCACAGCCACCTTGACTTCAATGTTAACAGTTCAACAGCTCAAGCCAACTATCACAGACATAAATGAGCCCATAAAGAATGGGGAGTGTGTGGATTACCAAAAGGGCTCTTTTGTTTATGAATTCTTGAAGTGGATGAAATTTGACGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGAACTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCCGCTGCTTTTGAGGAAATCCCTTACATGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTCGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTTGTACCTGATGTTTCAATACAAGTCTTAAATGTGACTGAGGGAGCTAAAATGGTTCAATTTGAGAAAGCATGA 573 0.4101 MAALPYAVPYEYIPFQTPDSDPAEERIVSNLTRFGVIIWFFVVLILTQSCTATLTSMLTVQQLKPTITDINEPIKNGECVDYQKGSFVYEFLKWMKFDETKLVIYESPEELDELFSNRSSDGGIAAAFEEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLVPDVSIQVLNVTEGAKMVQFEKA* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0727 190 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 189 IPR015683 -
Vvi4g0727 190 Gene3D - 15 101 - -
Vvi4g0727 190 SMART GluR_14 1 190 IPR001320 GO:0015276|GO:0016020
Vvi4g0727 190 SUPERFAMILY Periplasmic binding protein-like II 47 186 - -
Vvi4g0727 190 Pfam Ligand-gated ion channel 24 85 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0727 Vvi-Chr4 8130696 8132136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0727 32 189 Ion Channels AT5G11210 58.228 5.57e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0727 K05387 - vvi:100250263 309.686