Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0726 ATGCTAACAGAGGAGAGAATTGTCAGCAACTTGGCTCGGATTGTGATGATCATGTGGTTTTTTGTGGTGCTGATTCTCACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAACTCAACCCAACTATTACCGATATAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAATATGGCTCTTTCATTTATGAATTCTTGATCACGTCGATGAAATTTGATGAGTCCAAGCTTGTAAACTATGAGTCACCAGAAGGACTGGATGAATTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAATATACAAGTTTGATGGGTTTGGATTTGTCTTTCCAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACAGAGGGAGCTAAAATGTTACAATTTGAGAAGGCTTGGTTTGGGAAAAGACCCAATTGTACAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCGGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCTTCTGTAGCTCTCATCACATGCATCACCATATTCCTTTATCAAAATAGAGAAGCCTTAATAAACTTGAATCCCCCTTCTTCCATATGGAGAAAAATTAAAGCCATGGTGACACGCTTTGATGACAAAGATCTCATGTCCCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGCGGCATCAAGGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTGCCCACCAAGTCCATCAAGCCTTTTGATCCCAACACACAGCAATTTTGCTTTCTTCAGTGAACAAGGAATGCCTTCTTCTGGACATGGTGATCCAATCAGTCCAAATCGACTAATGTCTCCACATATATTATTTGAAGATGAACTTTCTAATATAAATCACGAGCAAATTAACAAGATGTCATGCCCCAAGACCCTCTCCAAGGACGTGATGGTCAATTCACACATCAAGCCCAAAAGCTCAAAGTGTAAATTGAATATTGTTGAGAATAATTCTAGAAGCTTATCTTAG 1122 0.4082 MLTEERIVSNLARIVMIMWFFVVLILTQSYTASLTSMLTVQQLNPTITDINELIKKGERVGCQYGSFIYEFLITSMKFDESKLVNYESPEGLDELFSKGGIAAAFDEIPYMKIFLAKYCSKYTAVGPIYKFDGFGFVFPKGSPLVADVSRKVLSVTEGAKMLQFEKAWFGKRPNCTELTSSVSSNSIGLNSFWGLFLIAGVASSVALITCITIFLYQNREALINLNPPSSIWRKIKAMVTRFDDKDLMSHTFRKSDQLPDKRHQGHGCSYSLASYTNCPPSPSSLLIPTHSNFAFFSEQGMPSSGHGDPISPNRLMSPHILFEDELSNINHEQINKMSCPKTLSKDVMVNSHIKPKSSKCKLNIVENNSRSLS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0726 373 Gene3D - 115 177 - -
Vvi4g0726 373 Pfam Ligand-gated ion channel 4 202 IPR001320 GO:0015276|GO:0016020
Vvi4g0726 373 CDD GluR_Plant 27 169 - -
Vvi4g0726 373 Gene3D - 3 86 - -
Vvi4g0726 373 Pfam Bacterial extracellular solute-binding proteins, family 3 26 171 IPR001638 -
Vvi4g0726 373 SUPERFAMILY Periplasmic binding protein-like II 26 175 - -
Vvi4g0726 373 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 257 IPR015683 -
Vvi4g0726 373 SMART GluR_14 5 171 IPR001320 GO:0015276|GO:0016020
Vvi4g0726 373 FunFam Uncharacterized protein 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0726 Vvi-Chr4 8108941 8110129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0726 4 329 Ion Channels AT2G29110 44.848 5.94e-74 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0726 K05387 - vvi:100264189 663.299