Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0725 ATGGCCATGTCACAGAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGCTTGAGCTGCATCTCCATGGCCCTCTCAGACTTCTATGCCTCTCATGGGCACTACAAGACTAGGCTGGTTCTGGAAATCAGAGATTCCAATAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTAGATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCATGCAGGCCGACTTTGTGATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATGTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCGATATTTTGTCCGAGCCACACTGAATGACTCAGCTCAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGAGAAGTGGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCATATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCGCCTACAGGAGCGTCATTCATCCATTAGCCACTGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGCTTACACCTCTAGGCCCTCGGCTTTTCACCAGAGCGAATGAGATTGGAATGATGGAAGAAGGTTATGTTTGGATTCTAACTGATGGGTTAACTAATATTTTGAGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGAAAATCCAACAAGAATATCCAACCAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTCTGGGCTAGCCATGGCAGTTGAAAAACTTGGGCCAACAAACTTCAGCTTCCAAAAGTCTAATACTTCCAGAACTTCAACCGATCCTGATACTGTAGGAGTCTCCCAAATTGGTCCAAATCTTCTCCAATCACTATTAAGTACTAGATTTAAGGGCCTCAGTGGACACTTTCAAATTTTTAACAGGCAACTATGCTCATCAGCTTTTCAGGTAGTCAATGTGATCGGCAAAGGGGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCTAATCTAGGAACAATCGTATGGCCAGGAGAATCCCCCTCCGTCCCTAAAGGTTGGGTCCTTCCAACCAATGGGAAGAAGTTGAGAATAGGAGTACCAGTCGGAAAAAGGTTATAG 1326 0.4449 MAMSQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYASHGHYKTRLVLEIRDSNRDVVGAAAAALDLLQNEEVQAIIGPASSMQADFVIGLGDKAHVPIMSFSATSPSLSSLRSRYFVRATLNDSAQVPAIRAIVQAFGWREVVLIYLDNEYGNGVIPYLTDALQEIDTRIAYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMLTPLGPRLFTRANEIGMMEEGYVWILTDGLTNILSTLDPSVIDSMQGVLGVKPHVPRSKELESFKIRWKRKIQQEYPTNESFELNIFGLWAYDAASGLAMAVEKLGPTNFSFQKSNTSRTSTDPDTVGVSQIGPNLLQSLLSTRFKGLSGHFQIFNRQLCSSAFQVVNVIGKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSVPKGWVLPTNGKKLRIGVPVGKRL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0725 441 CDD PBP1_GABAb_receptor_plant 12 398 IPR044440 -
Vvi4g0725 441 SUPERFAMILY Periplasmic binding protein-like I 10 422 IPR028082 -
Vvi4g0725 441 Pfam Receptor family ligand binding region 30 378 IPR001828 -
Vvi4g0725 441 FunFam Glutamate receptor 294 429 - -
Vvi4g0725 441 FunFam Glutamate receptor 132 290 - -
Vvi4g0725 441 PANTHER OS06G0188250 PROTEIN 1 393 - -
Vvi4g0725 441 Gene3D - 337 434 - -
Vvi4g0725 441 Gene3D - 128 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0725 Vvi-Chr4 8105891 8107997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0725 4 439 Ion Channels AT5G27100 51.910 2.24e-162 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0725 K05387 - vvi:100253755 807.364