Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0723 ATGCAGGCCAACTTCGTGATTGGTCTCGGAGACAAAGCTCATGTGCCCATCATTTCATTTTCTGCAACAAGCCCTTCTCTTTCTTCACTTCAGAGTCAATATTTTATCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAGGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTACGTGGACAACGAGTATGGTAATGGCGTTATACCATATCTTACCGATGCCTTGCAAGAGATTGACACCCGTATCACCTACAGGTGCGTCATTCCTCCATTTGCCACTGATGATCAAATAGTCAAAGAACTTTACAAGCTGATGACAATGTCAACCAGAGTTTTCATTGTACACATGTTCACACCTCTTGGTCCTCTGCTTTTCACCAAAGCAAATGAGGTCGGAATGATGGATGAAGGCTATGTTTGGATACTGACTGATGGGATGACTGATATCTTGAGTACTTTGGATGAGTCAGTCATTGACTCGATGCAAGGGGTGTTGGGTGTAAAGCCTCATGTTCCCAGATCTAAAGAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGACAATCCAAAATCAATATCCAACCAATGAAAGCTTTGAGCTGAACATATTTGGCCTCTGGGCTTATGATGCAGCTTCTGGGCTAGCCATGGCAGTTGAACAACTTGGGGCAACAAACTTCAGCTTCCAAAATTCTAATATTTCCAGGAATTCAACCGATCTTGGGACTATACAAGTCTCCCAAACGGGTCCATATCTTCTCCAATCGCTTGTAAGTACTAGATTCAGAGGCCTCAGTGGAGATTTTCAAATTGTTGATGGGCAACTACATTCATCAGCCTTTCAGATAGTCAATGTGATTGGTAAGGGGGAAAGAGGGGTAGCACTTTGGACACCGGAGAATGGAATTGTAAGAAATTCAAATTCTACTAATAAGGCTGATCTAAGAACCATCATATGGCCAGGAGAATCTCCTTCAGTTCCTAAAGGTTGGGTGCTTCCCACAAACGGCAAGAAGTCCTTGAGAATAGGAGTACCAGTGAAGGAGGGTTTTAGTGAATTTGTAAAGGTGACAAGAGATCCTATCACTAACGCTACGAAGGTCACTGGATACTGCATAGCTATCTTCGATGCTGTGATGGCGGCATTGCCATATGCTGTTCCTTACGAGTACATTCCCTTCGAGACCCCTGATGGGAAGCCCACTGGCAATTACGATGATTTGATATATCAAGTATATCTTCAGAAGTATGATGCTGTTGTGGGAGATACTACTATCGTAGCGAACAGGTCCTTATATGTAGACTTTACGCTGCCTTATACAGAATCTGGGGTGTCAATGATTGTGCCCATTATAGATAAAAGAAGTAAAAATGCATGGGTTTTCTTGAAGCCTCTGACTTGGGACCTTTGGGTGACAAGCGCTTGTTTCTTTGTCTTCATTGGTTTTGTGATTTGGGTTCTGGAACATCGTATAAATGAAGATTTCAGAGGGCCTCGTTCAAATCAAGTTGGCACGATCCTCTGGTTTTCATTCTCGACAATGGTGTTTGCCCAGAAGGAGAGAATTGTGAGTAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTTGTGGTGCTGATTCTCACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCAACAGCTCAAGCCGACTATCACAGACATAAATGAGCTCATAAAGAATGGGGAGCGTGTGGGTTACCAAAAGGGCTCTTTTGTTTATGAATTCTTGAAGTGGATGAAATTTGACGAAACCAAGCTTGTAATCTATGAGTCTCCAGAAGAACTGGATGAATTATTTTCAAACAGGAGTTCAGATGGTGGAATTGCCGCTGCTTTTGAGGAAATCCCTTACGTGAAGCTTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTTCAACCAACTTACAAGTTCGATGGGTTTGGATTTGTCTTCCCAAAGCGATCACCTCTTGTACCTGATGTTTCAATGCAAGTCTTAAACGTGACTGAGGGAGCTAAAATGGTTCAATTTGAAAGAGCATGGTTTGGGCAAACACCCAGTTGTACAGACCTCACCAGCTCAGTTTCTTCAAACAGCATTGGTCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCGCTTCATTTGTAGCTTTCATCCTCTGCATCGCCACCTTCCTTTACGAAAATAGAGATGCCCTGATGAATCTGGATCCCCCAGCTTCAGCATGGAGAAAAATTAAAGCCATGGCAACACGCTTTGACCAGAAAGATCCCAGCTCGCATACTTTCAGAAAAAGTGAAATGGTAGACAGAAGTGGGATCAATGGTATGGATGCAGATACAGCCTCGCCAGCTACCAACTGCCCCCCAAGTCCATCAAGCCTTTCCATCCAAACAGAGAGTAATTTTGCTTTCTTCAGAGGCCAAGAAACACCTTCTTCTGAATATGGTGATCCATTCAGTCCAAATAGGCAGACATCTCCACAGTAG 2532 0.4313 MQANFVIGLGDKAHVPIISFSATSPSLSSLQSQYFIRATLNDSAQVPAIRAIVQAFGWREVVLIYVDNEYGNGVIPYLTDALQEIDTRITYRCVIPPFATDDQIVKELYKLMTMSTRVFIVHMFTPLGPLLFTKANEVGMMDEGYVWILTDGMTDILSTLDESVIDSMQGVLGVKPHVPRSKELESFKIRWKRTIQNQYPTNESFELNIFGLWAYDAASGLAMAVEQLGATNFSFQNSNISRNSTDLGTIQVSQTGPYLLQSLVSTRFRGLSGDFQIVDGQLHSSAFQIVNVIGKGERGVALWTPENGIVRNSNSTNKADLRTIIWPGESPSVPKGWVLPTNGKKSLRIGVPVKEGFSEFVKVTRDPITNATKVTGYCIAIFDAVMAALPYAVPYEYIPFETPDGKPTGNYDDLIYQVYLQKYDAVVGDTTIVANRSLYVDFTLPYTESGVSMIVPIIDKRSKNAWVFLKPLTWDLWVTSACFFVFIGFVIWVLEHRINEDFRGPRSNQVGTILWFSFSTMVFAQKERIVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIKNGERVGYQKGSFVYEFLKWMKFDETKLVIYESPEELDELFSNRSSDGGIAAAFEEIPYVKLFLAKYCSKYTAVQPTYKFDGFGFVFPKRSPLVPDVSMQVLNVTEGAKMVQFERAWFGQTPSCTDLTSSVSSNSIGLNSFWGLFLIAGVASFVAFILCIATFLYENRDALMNLDPPASAWRKIKAMATRFDQKDPSSHTFRKSEMVDRSGINGMDADTASPATNCPPSPSSLSIQTESNFAFFRGQETPSSEYGDPFSPNRQTSPQ* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0723 843 FunFam Glutamate receptor 209 344 - -
Vvi4g0723 843 SUPERFAMILY Periplasmic binding protein-like II 323 696 - -
Vvi4g0723 843 CDD GluR_Plant 345 694 - -
Vvi4g0723 843 PIRSF IGluLR_plant 1 829 IPR017103 -
Vvi4g0723 843 FunFam Glutamate receptor 465 595 - -
Vvi4g0723 843 MobiDBLite consensus disorder prediction 822 843 - -
Vvi4g0723 843 FunFam Glutamate receptor 47 205 - -
Vvi4g0723 843 Pfam Ligand-gated ion channel 697 727 IPR001320 GO:0015276|GO:0016020
Vvi4g0723 843 Gene3D - 240 349 - -
Vvi4g0723 843 FunFam Glutamate receptor 346 465 - -
Vvi4g0723 843 Gene3D - 43 208 - -
Vvi4g0723 843 Gene3D - 353 464 - -
Vvi4g0723 843 Pfam Bacterial extracellular solute-binding proteins, family 3 371 696 IPR001638 -
Vvi4g0723 843 MobiDBLite consensus disorder prediction 770 810 - -
Vvi4g0723 843 FunFam Glutamate receptor 2.7 602 702 - -
Vvi4g0723 843 Pfam Receptor family ligand binding region 2 293 IPR001828 -
Vvi4g0723 843 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 770 IPR015683 -
Vvi4g0723 843 Gene3D - 465 603 - -
Vvi4g0723 843 SMART GluR_14 346 696 IPR001320 GO:0015276|GO:0016020
Vvi4g0723 843 SUPERFAMILY Periplasmic binding protein-like I 7 337 IPR028082 -
Vvi4g0723 843 CDD PBP1_GABAb_receptor_plant 1 312 IPR044440 -
Vvi4g0723 843 MobiDBLite consensus disorder prediction 793 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0723 Vvi-Chr4 8027034 8030099 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0723 1 806 Ion Channels AT2G29120 53.808 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0723 K05387 - vvi:100250263 1676.76