Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0721 ATGATGATCATATGGTTTTTTGTGGTGTCGATTCTTACTCAAAGTTACACGGCTAGCTTAACTTTGATGCTAATGGTTCAACAGCTCAAACCCACTGAAACCGGCATAAATGAGCTCATAAGAACAGGGCAACGCGTGGGCTACCAAAATGGCTCCTTCATTTTTGCATTTTTGAAACGGATGAAATTGGGTGAATCAAACCTTGTAAAATACGATTCTCCTGAACAATTAAATGAATCATTTTCAAGTGGCAGACGAAAAGGTGGCATTGCTGCTGCATTTGATGAAATTCCTTGCATGAAGCTTTTCCTAACAAAATATTGCTCCAAATATACTACGTTTCAACTAACGTACAAGTTGGATGGCTTTGGATTTGTAAGTCTCACATATAAATTTGCACAAAATGTCCTGGACCAGATGAATTGGACGTGGTCCAGATGGAAGAATCCAGATGCTACTTGCCCGCACTATTCGGACTGTGCTGGGATTGGAAAAGTGACACGTGGAGGGGATACCCCACAATAG 525 0.4095 MMIIWFFVVSILTQSYTASLTLMLMVQQLKPTETGINELIRTGQRVGYQNGSFIFAFLKRMKLGESNLVKYDSPEQLNESFSSGRRKGGIAAAFDEIPCMKLFLTKYCSKYTTFQLTYKLDGFGFVSLTYKFAQNVLDQMNWTWSRWKNPDATCPHYSDCAGIGKVTRGGDTPQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0721 174 SUPERFAMILY Periplasmic binding protein-like II 13 126 - -
Vvi4g0721 174 Pfam Ligand-gated ion channel 1 105 IPR001320 GO:0015276|GO:0016020
Vvi4g0721 174 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 126 IPR015683 -
Vvi4g0721 174 Gene3D - 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0721 Vvi-Chr4 8015500 8016024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0721 1 125 Ion Channels AT5G11210 51.200 6.89e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0721 K05387 - vvi:100252161 198.749