Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0715 ATGGCCATGGCACAAAACACAACAATACCAGTTAAAGTGGGAGTGGTTCTTGACATGGATACATGGCTGGGGAAGATGGGTTTGAGTTGCATCTCCATGGCACTCTCAGACTTCTATGCTTATCATGGGCACTACAAGACTAGGCTGATTCCCAAAATCAGAGATTCCAAAAGAGATGTTGTGGGTGCAGCTGCAGCAGCTCTATATTTATTACAAAATGAGGAAGTTCAAGCCATCATAGGACCAGCATCCTCCCTGCAAGCCAACTTTGTCATTGGTCTCGGAGACAAGGCTCATGTGCCCATCATTTCATTTTCTGCAACTAGTCCTTCTCTTTCTTCGCTCCGGAGTCAATATTTTGTCCGAGCCACACTGAATGACTCAGCACAAGTACCAGCTATAAGGGCAATTGTCCAAGCCTTTGGGTGGAGACAAGTTGTGCTCATTTACTTGGACAACGAGTACGGAAATGGAGTTATACCGTATCTTACTGATGCCTTGCAAGAGATTGACACCCGTATCTCCTACAGGAGCGTCATTCATCCATTAGCCACAGATGATCAAATCCTCGAAGAGCTTTACAAGTTGATGACAATGCCAACCAGAGTTTTCATTGTACACATGTTTGCACCTATAGGCCCACGACTTTTTGTCAGAGCGAACGAGATTGGAATGATGGAAGAAGGTTATGTATGGATTCTAACTGATGGGTTAACTGATATCTTGGGTACTTTGGATCCATCTGTCATTGATTCAATGCAAGGAGTGTTGGGGGTGAAGCCTCATGTTCCAAGATCGAAAAAGCTTGAAAGTTTTAAAATCAGATGGAAAAGGGAAATCCAACAAGAATATCCAACAAATGAAAGCTTTGAGCTGAACATTTTTGGACTCTGGGCTTATGATGCTGCTTGTGGGCTAGCCATGGCAGTTGAAAAACTTGGGGCAACAAACTTCAGATTCCAAAAGTCTAATTTTTCCAGAAATTCAACCGATCTTGATACTGTAGGAGTCTCCCTAATTGGTCCAAATCTTCTCCAATCACTATTATATACTAGATTTAGAGGCCTCAGTGGAGATTTTCAAATTGTTAACAGGCAACTACAGTCATCAGCTTTTGAGGTAGTGAATGTGATCGGCAAGGGAGAAAGAGGGGTTGGATTTTGGACACCAGAGAATGGAACTGTAAGAAAGTTGGATTCTACTTCCAAGCCCAATCTAGGAACAATCGTATGGCCGGGAGAATCTCCCTCCATCCCTAAAGGTTGGGTCCTTCCAACCAATGGGAAGAAGTTGAGAATAGGAGTACCAGTCACCAAGGGTTTTGGTGAATTTGTAAAGGTGACGCGAGATCCTAGTAGTAACGCAACGAAGGTCAGTGGATTTTCCATAGCAGTCTTCGATGCAGTGATGGCAGCATTACCATATGCTGTTCCTTATGAGTACATTCCCTTCCAGACGCCTGATGGCAATCCAGCGGGTGATGACAACGATTTGATATATCAAGTATATCTCCAGAAGTATGATGCTGTGGTGGGAGCTATTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTTACACTACCTTACACAGAATCTGGGGTGTCAATGGTCGTGCCCACTATAGATGAAAGAAAAGAAAATGCATGGGTTTTCTTGAAGCCACTTACTTGGGACCTTTGGGTGACAAGCTTTTGTTTCTTCGTATTCATTGGCTTTGTGATTTGGGTTCTTGAACATCGAGTAAATAAAGACTTCAGAGGGCCTCGTTCATATCAAGTTGGCACTATCTTCTGGTTTTCATTCTCAACATTGGTGTTTGCTCAGAATGAGAGAATTGTCAGCAACTTGGCTCGGATTGTGATGATCGTGTGGTTTTTTGTGGTGCTAATTCTTACTCAAAGTTACACAGCCAGCTTGACTTCAATGTTAACAGTTCGACAACTCAACCCAACTATCACCGATACAAATGAGCTCATAAAGAAGGGGGAGCGTGTAGGTTGCCAATATGGCTCTTTCATTTATGAATTCTTGATCAAGTCGATGAAATTTGAAGAGTCCAAGCTTGTAAACTATAATTCAACAGAAGAACTGGATGAGTTATTTTCAAAAGGTGGAATTGCTGCTGCATTTGATGAAATCCCTTGCATTAAGATTTTCCTTGCAAAATATTGCTCCAAATACACTGCAGTCGGACCAATATACAAGTTTGATGGGTTTGGATTTGTCTTTCCAAAGGGTTCACCCCTTGTAGCGGATGTTTCAAGGAAAGTTTTAAGCGTGACCGAGGGAGCTAAAATGTCACAATTTGAGAAGGCATGGTTTGGGCAAATACCCAGTTGTCCAGAGCTCACCAGCTCAGTTTCTTCAAACAGCATCAGCCTTAATAGCTTTTGGGGCCTATTCCTCATTGCTGGAGTCACTTCATTCGTAGCTCTCATCACATGCATCACCATATTCCTTCATGAAAATAGAGAAGCCTTAATAAACTTGAATCCCCCATCTTCCAGATGGAGAAAAATTAAAGCCATGGCGACACTCTTTGATGAGAAAGATCTCAGGTCCCATACCTTTAGAAAAAGTGATCAACTTCCAGACAAGCAGCATCAAGGCCATGGATGCAGTTACAGCCTCGCCAGCTACACCAACTGCCCTCCAAGTCCATCAAGCCTTTTGATCCCAACACACAGCAATTTTGCTTTCTTCAGTGAACAAGGAACGCCGTCTTCTGGACATGGTGATCCAGTCAGTCCAAATCGACCGATGTCTCCACATATATTGTTTGAATATGAGCTTGCTAATATAAATCACGAGCAAATTAACAAGATGCCATGCCCCAAGATCCTCTCCAAGGGCGTGACGATCAATTCACACATCAAGCCCGAAAGCTCAAAGTGTAAATTGAATATTGTTGAGAATAATTCTAGAAGCTTTTCTTAG 2940 0.4265 MAMAQNTTIPVKVGVVLDMDTWLGKMGLSCISMALSDFYAYHGHYKTRLIPKIRDSKRDVVGAAAAALYLLQNEEVQAIIGPASSLQANFVIGLGDKAHVPIISFSATSPSLSSLRSQYFVRATLNDSAQVPAIRAIVQAFGWRQVVLIYLDNEYGNGVIPYLTDALQEIDTRISYRSVIHPLATDDQILEELYKLMTMPTRVFIVHMFAPIGPRLFVRANEIGMMEEGYVWILTDGLTDILGTLDPSVIDSMQGVLGVKPHVPRSKKLESFKIRWKREIQQEYPTNESFELNIFGLWAYDAACGLAMAVEKLGATNFRFQKSNFSRNSTDLDTVGVSLIGPNLLQSLLYTRFRGLSGDFQIVNRQLQSSAFEVVNVIGKGERGVGFWTPENGTVRKLDSTSKPNLGTIVWPGESPSIPKGWVLPTNGKKLRIGVPVTKGFGEFVKVTRDPSSNATKVSGFSIAVFDAVMAALPYAVPYEYIPFQTPDGNPAGDDNDLIYQVYLQKYDAVVGAITILANRSLYVDFTLPYTESGVSMVVPTIDERKENAWVFLKPLTWDLWVTSFCFFVFIGFVIWVLEHRVNKDFRGPRSYQVGTIFWFSFSTLVFAQNERIVSNLARIVMIVWFFVVLILTQSYTASLTSMLTVRQLNPTITDTNELIKKGERVGCQYGSFIYEFLIKSMKFEESKLVNYNSTEELDELFSKGGIAAAFDEIPCIKIFLAKYCSKYTAVGPIYKFDGFGFVFPKGSPLVADVSRKVLSVTEGAKMSQFEKAWFGQIPSCPELTSSVSSNSISLNSFWGLFLIAGVTSFVALITCITIFLHENREALINLNPPSSRWRKIKAMATLFDEKDLRSHTFRKSDQLPDKQHQGHGCSYSLASYTNCPPSPSSLLIPTHSNFAFFSEQGTPSSGHGDPVSPNRPMSPHILFEYELANINHEQINKMPCPKILSKGVTINSHIKPESSKCKLNIVENNSRSFS* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0715 979 FunFam Glutamate receptor 294 429 - -
Vvi4g0715 979 SUPERFAMILY Periplasmic binding protein-like I 10 422 IPR028082 -
Vvi4g0715 979 Gene3D - 722 783 - -
Vvi4g0715 979 CDD GluR_Plant 429 775 - -
Vvi4g0715 979 FunFam Glutamate receptor 132 290 - -
Vvi4g0715 979 SMART GluR_14 430 777 IPR001320 GO:0015276|GO:0016020
Vvi4g0715 979 SUPERFAMILY Periplasmic binding protein-like II 407 777 - -
Vvi4g0715 979 Gene3D - 128 293 - -
Vvi4g0715 979 FunFam Glutamate receptor 549 679 - -
Vvi4g0715 979 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 851 IPR015683 -
Vvi4g0715 979 Pfam Bacterial extracellular solute-binding proteins, family 3 455 777 IPR001638 -
Vvi4g0715 979 CDD PBP1_GABAb_receptor_plant 12 398 IPR044440 -
Vvi4g0715 979 FunFam Glutamate receptor 430 549 - -
Vvi4g0715 979 Gene3D - 430 548 - -
Vvi4g0715 979 Gene3D - 549 693 - -
Vvi4g0715 979 Pfam Receptor family ligand binding region 30 378 IPR001828 -
Vvi4g0715 979 PIRSF IGluLR_plant 1 879 IPR017103 -
Vvi4g0715 979 Gene3D - 338 429 - -
Vvi4g0715 979 Pfam Ligand-gated ion channel 778 807 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0715 Vvi-Chr4 7892040 7897638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0715 2 894 Ion Channels AT2G29120 52.503 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0715 K05387 - vvi:100264189 1932.92