Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0712 ATGCAGGCCAACTTTATGATCGGTCTTGGAAGCAAAGCTCGGGTGCCCATCATTTCATTTTCTGCAACAAGTCCTTCTCTTTCTTCGCTCCAGAGTCAATATTTTGTCCGAGCCACCCTAAATGACTCAGCTCAAGTACCAGCAATAAAGGCAATTGTCCAAGCCTTTGGATGGAGAGAAGTTGTGCTTATTTGCGTGGACAATGAGTATGGCAATGGAGTCATACCGTCTCTGACTAGTGCCTTGCAGGAGGTGGACACCCATGTGACCTACCGGAGCGCCATTCATCTATCGGCAACTGATGATCAAATCGTTAAAGAACTTTACAAGTTGATGACGATGTCAACTAGGGTTTTCATTGTGCATATGTTTACACCTCTTGGCTCCCGGCTTTTTACCAAAGCAAATGAGGTTGGAATGATGGAAGAAGGCTATGTTTGGATACTAACTGATGGGATGACTGACTTCTTGAGTACTTTGGACCCTTCAGCCATTGATTCCATGCAAGGGGTGTTGGGCGTCAAGCCTCATGTTCCAAGAACCAAAGAGCTTGACAGTGTTAAAATCAGATGGAAAAAGAAATTCCAAGAAGAATATCCAATCAATGAAATCTCTGAGCTGAACATTTTTGGACTCCGGGCATATGATGCTGCTTCTGCACTAGCCATAGCAGTTGAAAAACTTAGCGTGGGAAACTTCAGCTTCCAAAAGACTAATATTTCCAGAGATTCAATCAGTCTTGAGAGTATTAGAGTTTCCCCAATTGGACCAAATATTCTCCATTCACTATTAAGTACTCAATTCAGAGGCCTTACCGGACATTTTCAAATTGTAGATGGGCAACTACACTCATCAGCTTTCCAGATAGTTAATGTGAATGGTGAAGGGGAAAAAGGGGTTGGATTTTGGACACAAGAGAATGGAATTGTAAGAAGACCGAATTCTACTTCTAAGGTCAATCTAAGAGCCATTACATGGCCAGGAGAATCTACTTCTGTTCCTAAAGGTTGGGTGCTTCCTACCAACGGAAAGAAGTTGAAGATAGGAGTTCCAGTGAAGGAGGGTTTTAGTGAATTTGTGAAGGTGATGCGAGATCCTATCACTAATACAACAAAGGTCACTGGCTACTGCATTGCTATCTTCGATGCCGTAATGGCAACATTACCATATGCTGTTCCTTACGAATACGTTCCCTTTGAGACACCTGATGGAAATGCTGCTGGTAACTACGATGAATTGATATCTCAAGTATATTTTCAGAAGTATGACGCTGTGGTGGGAGATACTACTATTCTAGCGAACAGGTCCTTGTATGTAGACTTCACACTACCTTACACCGAGTCTGGCGTATCAATGATGGTGCCCATCATCGATAACAGAAGTAAAAGTGCATGGGTCTTTTTGAAGCCATTAACTTGGGACCTTTGGGTGACAAGTGCTTGTTTCTTTGTCTTCATTGGCTTTGTGATTTGGACTCTTGAACATCGAATAAATGAAGATTTCAGAGGGCCTCGTTCACATCAAGTTGGCACAATTTTCAGCTTCTCCTTCTCAACATTGGTGTCTGCTCAGAAGGAGAGAATTGTCAGCAACTTGGCTCGGTTCGTGGTGATCATATGGTTTTTTGTGGTGCTGATTCTTACTCAAAGTTACACGGCCAGCTTGACTTCGATGCTAACGGTTCAACAGCTCAAACCGACTATAACTGACATAAACGAGCTCATAAGAACAGGGCAGCGCGTGGGCTACCAAAATGGCTCCTTCATTCTTGCATTTTTGGAACGGATGAAATTCCATGAATCGAACCTTGTAATATACAATTCTCTTGAACAATTAGATGAATTATTTTCAAAGGGGAGCCAAAAAGGTGGCATTGCTGCTGCATTTGATGAAATCCCTTACATGAAGCTTTTTCTAGCAAAATATTGCTCCAAATATACTGCGGTTCAGCCAACGTACAAGTTCGATGGTTTTGGATTTGTCTTCCCAAAGCATTCGCCTCTGGTTTCTGACGTTTCAATGCAAATCTTAAATGTGACTGAGGGAGATCAAATGGCGAAAATTGAGCAAGCATGGTTTGGGCAGAATTCGAGTTGCCCAGGGCTCAACAGCTCGCTGTCTTCAGACAGCATCGGAGTCGATAGTTTTTGGGGCCTATTCCTTATTGCTGGAGTGGCTTCATCTGCAGCTCTCATCATACGCATGGCCACTTTCCTTTATGAAAACACAGATACTTTGGTACAATTGGATCCCCCAGCTTCAGTATGGAGAAAAATTAAAGCCTTGGCAACCCTCTTTGATAACAAGGACCTCAGCTCCCATAATTTCAGAAAAAGTGAAATGGGAGATAGAAGTGGCACCAATGGCATGGATGCAGCGACTGCCTCTCCAGCCACAAACTACCCGCCGAGTCCATCAAGCCTTTCAGTCCAAACACAGAGTAATTTTGCTTTCTCCAGAGACCAAGCAACACCTGCTTCCGAATATGGTGATCAAATGAGTCCAAATGGGCAGACACCTCCTGAGATAGCATTTGGTATCGAGCTTGCCAATTCAAAGCAAGAGCTGAAAGTACCTGAAGTAGTTCATGTGAATAACTGA 2601 0.4321 MQANFMIGLGSKARVPIISFSATSPSLSSLQSQYFVRATLNDSAQVPAIKAIVQAFGWREVVLICVDNEYGNGVIPSLTSALQEVDTHVTYRSAIHLSATDDQIVKELYKLMTMSTRVFIVHMFTPLGSRLFTKANEVGMMEEGYVWILTDGMTDFLSTLDPSAIDSMQGVLGVKPHVPRTKELDSVKIRWKKKFQEEYPINEISELNIFGLRAYDAASALAIAVEKLSVGNFSFQKTNISRDSISLESIRVSPIGPNILHSLLSTQFRGLTGHFQIVDGQLHSSAFQIVNVNGEGEKGVGFWTQENGIVRRPNSTSKVNLRAITWPGESTSVPKGWVLPTNGKKLKIGVPVKEGFSEFVKVMRDPITNTTKVTGYCIAIFDAVMATLPYAVPYEYVPFETPDGNAAGNYDELISQVYFQKYDAVVGDTTILANRSLYVDFTLPYTESGVSMMVPIIDNRSKSAWVFLKPLTWDLWVTSACFFVFIGFVIWTLEHRINEDFRGPRSHQVGTIFSFSFSTLVSAQKERIVSNLARFVVIIWFFVVLILTQSYTASLTSMLTVQQLKPTITDINELIRTGQRVGYQNGSFILAFLERMKFHESNLVIYNSLEQLDELFSKGSQKGGIAAAFDEIPYMKLFLAKYCSKYTAVQPTYKFDGFGFVFPKHSPLVSDVSMQILNVTEGDQMAKIEQAWFGQNSSCPGLNSSLSSDSIGVDSFWGLFLIAGVASSAALIIRMATFLYENTDTLVQLDPPASVWRKIKALATLFDNKDLSSHNFRKSEMGDRSGTNGMDAATASPATNYPPSPSSLSVQTQSNFAFSRDQATPASEYGDQMSPNGQTPPEIAFGIELANSKQELKVPEVVHVNN* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0712 866 FunFam Glutamate receptor 345 464 - -
Vvi4g0712 866 Pfam Receptor family ligand binding region 2 294 IPR001828 -
Vvi4g0712 866 CDD PBP1_GABAb_receptor_plant 1 313 IPR044440 -
Vvi4g0712 866 Gene3D - 43 207 - -
Vvi4g0712 866 FunFam Glutamate receptor 2.7 601 701 - -
Vvi4g0712 866 FunFam Glutamate receptor 464 594 - -
Vvi4g0712 866 MobiDBLite consensus disorder prediction 789 839 - -
Vvi4g0712 866 CDD GluR_Plant 344 693 - -
Vvi4g0712 866 Gene3D - 248 344 - -
Vvi4g0712 866 Gene3D - 641 701 - -
Vvi4g0712 866 SUPERFAMILY Periplasmic binding protein-like I 9 337 IPR028082 -
Vvi4g0712 866 MobiDBLite consensus disorder prediction 776 842 - -
Vvi4g0712 866 Pfam Bacterial extracellular solute-binding proteins, family 3 370 695 IPR001638 -
Vvi4g0712 866 SUPERFAMILY Periplasmic binding protein-like II 321 696 - -
Vvi4g0712 866 Gene3D - 345 464 - -
Vvi4g0712 866 SMART GluR_14 345 695 IPR001320 GO:0015276|GO:0016020
Vvi4g0712 866 Gene3D - 465 603 - -
Vvi4g0712 866 Pfam Ligand-gated ion channel 696 726 IPR001320 GO:0015276|GO:0016020
Vvi4g0712 866 PIRSF IGluLR_plant 1 830 IPR017103 -
Vvi4g0712 866 FunFam Glutamate receptor 216 344 - -
Vvi4g0712 866 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 771 IPR015683 -
Vvi4g0712 866 FunFam Glutamate receptor 47 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0712 Vvi-Chr4 7856758 7859906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0712 1 805 Ion Channels AT2G29120 52.768 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0712 K05387 - vvi:100252161 1677.14