Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0705 ATGGTTGTTGAAGTGGAAAGTTGGAGGATGGCGTCCAAGCTCTGCGACTCCTGTAAATCGGCCCCGCCCACTCTCTTCTGCCGTGCCGACTCCGCCTTTCTGTGCGTGGCCTGTGACTCCAAGGTCCATGCGGCCAACAAGCTCGCCTCTCGCCACGCGCGGGTGTGGATGTGCGAGGTCTGCGAGCAGGCTCCTGCCCATGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGCGTCACATGCGACCGCGATATCCACTCCGCCAACCCTCTCGCTCGCCGCCACGAGCGAGTTCCGGTGGTGCCGTTCTACGACTCTGCCGCCGCTGCTGCTAAGTCCAACGCCGTCAACCTTCTAGTTGACGACCGTTATTACTCCGATCCCGACGGCGATGCTAGCCGCGAAGAGGCCGAGGCCGCTTCCTGGTTGCTCCCGAACCCAAACCCTAAGCTCGCTGAGAGTTCAGATCTGAATTCGAGTCATTACATGTTCTCTGACATAGATCCGTATCTGGATCTGGATTATCCGTCGATGGATCCAAAGCTTCAATCGCAGCAGCAGCAGCAAAGTTCGGGAACTGATGGAGTTGTTCCAGTACAGAACAAGAGTGTTCAAGCTCCATTGGTGAACGACAACTGCTTTGACATGGATTTCTCAGGCTCCAAGTCCTTCTACAACGGACAATCTCTCAGCCAAAGTGTATCGTCCTCCTCTTTAGAAGTGGGAGTCGTGCCAGATGGTAACGCCATGGTTGATGTAACAAACCCTTTCGGTAGATCGATGAACACCGGATCCGAATCAGCTAATCAAACTGCTCAAATTTCATCAGGAATAGATCGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGAAAGTTTGAGAAAACGATCCGATACGCATCACGAAAAGCCTACGCCGAAACGAGACCGAGAATCAAGGGAAGGTTCGCGAAGCGATCGGAGATCGAAGTCGATTACAGCTCGTCTGGAGCACTGACCGCCGACTCAGGATACGGCGTCGTTCCATCGTTTTGA 1044 0.5421 MVVEVESWRMASKLCDSCKSAPPTLFCRADSAFLCVACDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVVPFYDSAAAAAKSNAVNLLVDDRYYSDPDGDASREEAEAASWLLPNPNPKLAESSDLNSSHYMFSDIDPYLDLDYPSMDPKLQSQQQQQSSGTDGVVPVQNKSVQAPLVNDNCFDMDFSGSKSFYNGQSLSQSVSSSSLEVGVVPDGNAMVDVTNPFGRSMNTGSESANQTAQISSGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEIEVDYSSSGALTADSGYGVVPSF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0705 347 MobiDBLite consensus disorder prediction 128 148 - -
Vvi4g0705 347 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 334 IPR045281 GO:0009909
Vvi4g0705 347 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Vvi4g0705 347 MobiDBLite consensus disorder prediction 175 198 - -
Vvi4g0705 347 CDD Bbox1_BBX-like 58 100 - -
Vvi4g0705 347 SMART bboxneu5 58 100 IPR000315 GO:0008270
Vvi4g0705 347 SMART bboxneu5 10 57 IPR000315 GO:0008270
Vvi4g0705 347 Pfam CCT motif 280 322 IPR010402 GO:0005515
Vvi4g0705 347 MobiDBLite consensus disorder prediction 179 198 - -
Vvi4g0705 347 CDD Bbox1_BBX-like 14 57 - -
Vvi4g0705 347 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi4g0705 347 Pfam B-box zinc finger 55 100 IPR000315 GO:0008270
Vvi4g0705 347 Pfam B-box zinc finger 13 52 IPR000315 GO:0008270
Vvi4g0705 347 ProSiteProfiles CCT domain profile. 280 322 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0705 Vvi-Chr4 7669873 7671263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0705 10 347 C2C2-CO-like Transcription Factor Family AT5G24930 63.014 2.21e-143 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi4g0705 zf-B_box 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0705 - - vvi:100246796 675.626