Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0680 ATGGCGGAGGTGATATCGATGGAAGATATCAGAGCGACGGCCTCTACCCTTGGGATCGATGTTTCGAATATTGACTTCGATTCCATACGTCTCCCCCCTGGGGAAGATTTTGGCATCACAAGTGATGATGATCTTCATGAAGAGGATCCTCTTGAATACGATTCTGGTTTTGGTAACATCATTGTTGTGGATAATCTCCCTGTTGTTCCTCGTGAGAAATTTGAGAAGCTTGAAGGGGTTGTTCGCAAAATTTACAGTCAGATTGGTGTCATTAAGGAGGATGGACTTTGGATGCCTGTTGATTCTGATACCCAGAAAACATTGGGTTATTGCTTTATTGAGTATAATACCCCTCAGGAAGCCGAGCTTGCTCGGGAGAAGACCAATGGGTACAAGTTGGACAGGGCGCATATATTTGCTGTAAATATGTTTGATGACTTTGACAGGTTCATGAAAGTTCCTGATGAGTGGGCACCTCCTGAAACCAAGCCATATACCCCTGGGGAAAATTTACAACACTGGCTTACTGATGAAAAAGCAAGAGATCAGTTTGTGATTCGTGCTGGCTCAGACACGGAGGTTTTATGGAATGATGCAAGACATTTGAAGCCTGAGCCTGTTTACAAACGTGCTTACTGGACTGAGAGTTTTGTGCAGTGGTCCCCACTAGGGACTTACTTGGCAACAGTTCACAGGCAGGGTGCTGCTGTCTGGGGAGGTGCTACTGCCTTCAACCGCCTAATGCGTTATGCTCATCCCCAGGTTAAACTGATTGATTTCTCCCCTGGTGAGAAGTATTTGGTTACCTACAGCAGCCATGAACCAAGCAATCCTCGCGATACTCATAGGGTTGTTCTGAATGTGTTTGATGTGAGAACTGGAAAAGTGATGAGAGATTTCAAGGGAAGTATGGACGAATTTTCAGTTGGAGGAGCTGGGGGTGTTTCTGGGGTCTCTTGGCCTGTTTTCAGGTGGGGAGGCGGCAAAGAAGATAAGTACTTTGCCAGGATTGGGAAAAATGTGATCTCTGTCTATGAAACAGAAACGTTTTCTCTTATTGACAAGAAATCCTTGAAGGTTGAAAATGTTATGGACTTAAGTTGGTCACCAGCTGATCCCATTCTTGCCCTCTTTGTTCCTGAACTTGGTGGTGGGAATCAACCTGCTAGGGTGAGTCTGGTTCAAATCCCCAGTAAAGAGGAGTTGAGGCAGAAGAATCTCTTTAGTGTTAGTGACTGCAAAATGTACTGGCAAAGCAATGGGGACTACCTGGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAAAGCACATACACTGGCTTTGAGCTTTTCCGAATTAAAGAAAGGGATATACCAATTGAGGTTTTGGAGCTTGAGAATAAGAATGACAAGATTATTGCATTTGCTTGGGAACCAAAAGGTCATAGGTTTGCGGTTATTCATGGGGATAGCCCAAGGCCTGATGTAAGTTTTTACACGATGCGTAGTGGCAGTAATACAGGCCGGGTCTCTAAACTCACTACTCTCAAGGGGAAGCAGGCAAATGCCCTTTTCTGGTCACCAGCTGGTCGCTATATCATACTTGCAGGGCTGAAGGGATTCAATGGACAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCAACTGCTGAACATTTCATGGCTACAGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTTCAGTTACTTCAGTTCATGAGATGGAAAATGGCTTTAACATATGGTCCTTCAACGGCAAGCTCCTGTATCGGATACTAAAGGATCACTTCTTCCAGTTCTTGTGGCGTCCACGACCACCATCCTTCTTGAGTCCCGAGAAAGAGGAAGAGATAGCAAAGAACTTGAAAAAGTACAGTAAGAAGTACGAGGCAGAGGACCAGGATGTCTCTATGTTATTAAGTGAGCAGGATCGTGAGAAGCGGAAGATGTTGAAGGATGAATGGGAAAGGTGGGTCAATGACTGGAAGCGGTGGCATGAGGAAGAGAAAGCCGAGAGGCAGAGGCTCAGGGATGGTGAAGCCAGTGACGAGGAAGAGGAGTACGAGGCTAAGGAAGTTGAAGTTGAGGAGCTGTTGGACGTCTCAGAGGAGGTGCTTTCTTTTGATTTGGATCAGGAGTGA 2157 0.452 MAEVISMEDIRATASTLGIDVSNIDFDSIRLPPGEDFGITSDDDLHEEDPLEYDSGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDSDTQKTLGYCFIEYNTPQEAELAREKTNGYKLDRAHIFAVNMFDDFDRFMKVPDEWAPPETKPYTPGENLQHWLTDEKARDQFVIRAGSDTEVLWNDARHLKPEPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGATAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNVFDVRTGKVMRDFKGSMDEFSVGGAGGVSGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDLSWSPADPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDSPRPDVSFYTMRSGSNTGRVSKLTTLKGKQANALFWSPAGRYIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWERWVNDWKRWHEEEKAERQRLRDGEASDEEEEYEAKEVEVEELLDVSEEVLSFDLDQE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0680 718 Gene3D - 414 622 IPR015943 GO:0005515
Vvi4g0680 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 146 IPR000504 GO:0003723
Vvi4g0680 718 MobiDBLite consensus disorder prediction 674 698 - -
Vvi4g0680 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 135 IPR000504 GO:0003723
Vvi4g0680 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 47 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g0680 718 SMART rrm1_1 60 141 IPR000504 GO:0003723
Vvi4g0680 718 FunFam Eukaryotic translation initiation factor 3 subunit B 54 153 - -
Vvi4g0680 718 CDD RRM_eIF3B 58 142 IPR034363 -
Vvi4g0680 718 FunFam Eukaryotic translation initiation factor 3 subunit B 410 625 - -
Vvi4g0680 718 Gene3D - 179 381 IPR015943 GO:0005515
Vvi4g0680 718 Coils Coil 686 706 - -
Vvi4g0680 718 SUPERFAMILY DPP6 N-terminal domain-like 216 599 - -
Vvi4g0680 718 SUPERFAMILY RNA-binding domain, RBD 56 138 IPR035979 GO:0003676
Vvi4g0680 718 PIRSF Transl_init_eIF3b 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g0680 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 43 707 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vvi4g0680 718 FunFam Eukaryotic translation initiation factor 3 subunit B 180 381 - -
Vvi4g0680 718 Gene3D - 58 142 IPR012677 -
Vvi4g0680 718 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0680 Vvi-Chr4 7178919 7187738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0680 9 711 Eukaryotic Initiation Factors Gene Family AT5G27640 79.433 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0680 K03253 - vvi:100244090 1430.62