Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0674 ATGGCGGAGGAAGACGAGAAAGCTCTAGAGGAACAGCTGGAGAATCAATTAGAAGAACAGAGAGACTCACTCGCTGTTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTTCACCTGAAACGGGCACGTTTATTGCGAGAAGCTGATTCAGCGCTACATGATCACAAATATACTGCTGAGGATGTCAAGGTGGAGCCCCTTGATCCATCAGATGCTGAAGCAGAACCACTAGAGGAGCAAAGTTACCATGTTGGATCAAAATGTAGATTCCGTTACACTGATGGTCGCTGGTATAATGGTGTCATTTTAGGGTTGGAAGGTTTGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGGAGTTGATGTCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGGAGCAATCACTCGTGGGGTCCAGCATTTGGGCAGTCTCAGACGCCAAATATGGCATTTGGAAGGAGGCTGAACTTGAATCGTGGGACAATGAACTCAGAGTAGGAAAGGTTGTTTTCCGAGATGACGGGAGCTCGGAAAAGCTTGGGACTGAATCCATTTCCTTATCTGAGTATGCTGAAATGAGTGATGGGGAAACTGATTCAAGTTCAGAACAATCTGACTCTTGTGATGATGAAGAAGAAGAGGGGTCACAAGGTTTAGGATTTCTAGAAAGCACTGCCCTGCAGAGGGGCATCCAGACAGAGACTGCCATTTTTGCCAAGTGGGAGAATCACACCCGTGGAATAGCTTCCAAGATGATGGCCAACATGGGTTACCGAGAAGGAATGGGTTTAGGGGCATCTGGACAGGGAATCGTGGACCCTCTCTCTGTGAAAGTCCTCCCACCAAAGCAATCTCTTGATCATGCCCTTGAGTCCCATGAAAACGAGGAGAACAAAGAAAGTAGGGGGAAGAAGCGGAGTAGAGGCGGTAAGAGAAAACGTGATAAGAAGTTTGCTGCTGCAGCTCGGGCTAAAAAAGATAAAGAAGAATCAAGACCAGATGTCTTCAGCCTCATCAATACCCAACTTGCAATGCATGGAGAAGCTTTGAATGGTGGATCAGCAAAGAAGCAGCAGAATAAAAGTTTAGGGGAGGGGAAGAAAGAAGACAGACGGGCTCTGGTTGCCTATGATGATGAAGTGAGGGAATTGAGAATTCGAGTTGAGAAGCTGGAAGAAATGGTGAACCGAAACAAGAAGGAGAAAGTAGTTTACGAGGCTGCCATGAGAAAATTGAATGAGACTCGCAAAGCTTTGGCAGAGGCCGAGGCAGCTCATGCATCTGCTTCAAAAGCAGTTGTGGGCAGAGAAAAAGAGAAGAGATGGCTCAAGTTTTGA 1491 0.4614 MAEEDEKALEEQLENQLEEQRDSLAVLKEALVSDPTNSELLSVHEELIWAIKDAEEGLFHLKRARLLREADSALHDHKYTAEDVKVEPLDPSDAEAEPLEEQSYHVGSKCRFRYTDGRWYNGVILGLEGLDSAKISFLSPTSENMLICKFFLQQRCRFGTNCRLSHGVDVHLSSLKQYNPTIWEQSLVGSSIWAVSDAKYGIWKEAELESWDNELRVGKVVFRDDGSSEKLGTESISLSEYAEMSDGETDSSSEQSDSCDDEEEEGSQGLGFLESTALQRGIQTETAIFAKWENHTRGIASKMMANMGYREGMGLGASGQGIVDPLSVKVLPPKQSLDHALESHENEENKESRGKKRSRGGKRKRDKKFAAAARAKKDKEESRPDVFSLINTQLAMHGEALNGGSAKKQQNKSLGEGKKEDRRALVAYDDEVRELRIRVEKLEEMVNRNKKEKVVYEAAMRKLNETRKALAEAEAAHASASKAVVGREKEKRWLKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0674 496 MobiDBLite consensus disorder prediction 339 385 - -
Vvi4g0674 496 MobiDBLite consensus disorder prediction 475 496 - -
Vvi4g0674 496 SMART c3hfinal6 142 168 IPR000571 GO:0046872
Vvi4g0674 496 MobiDBLite consensus disorder prediction 371 385 - -
Vvi4g0674 496 ProSiteProfiles G-patch domain profile. 296 342 IPR000467 GO:0003676
Vvi4g0674 496 Coils Coil 425 483 - -
Vvi4g0674 496 MobiDBLite consensus disorder prediction 339 355 - -
Vvi4g0674 496 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
Vvi4g0674 496 Coils Coil 3 30 - -
Vvi4g0674 496 Pfam G-patch domain 296 338 IPR000467 GO:0003676
Vvi4g0674 496 MobiDBLite consensus disorder prediction 400 421 - -
Vvi4g0674 496 MobiDBLite consensus disorder prediction 356 370 - -
Vvi4g0674 496 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Vvi4g0674 496 MobiDBLite consensus disorder prediction 253 267 - -
Vvi4g0674 496 Pfam CCCH-type zinc finger 147 167 IPR041367 -
Vvi4g0674 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Vvi4g0674 496 MobiDBLite consensus disorder prediction 237 252 - -
Vvi4g0674 496 Gene3D - 104 180 - -
Vvi4g0674 496 SMART G-patch_5 294 340 IPR000467 GO:0003676
Vvi4g0674 496 MobiDBLite consensus disorder prediction 237 267 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi4g0674 G-patch 1.3e-13 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0674 - - vvi:100254356 869.381