Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0674 | ATGGCGGAGGAAGACGAGAAAGCTCTAGAGGAACAGCTGGAGAATCAATTAGAAGAACAGAGAGACTCACTCGCTGTTCTCAAAGAAGCCCTTGTTTCCGACCCTACAAACTCGGAGCTCCTCTCGGTTCATGAGGAGCTTATTTGGGCAATCAAAGATGCAGAAGAAGGGCTTTTTCACCTGAAACGGGCACGTTTATTGCGAGAAGCTGATTCAGCGCTACATGATCACAAATATACTGCTGAGGATGTCAAGGTGGAGCCCCTTGATCCATCAGATGCTGAAGCAGAACCACTAGAGGAGCAAAGTTACCATGTTGGATCAAAATGTAGATTCCGTTACACTGATGGTCGCTGGTATAATGGTGTCATTTTAGGGTTGGAAGGTTTGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGGAGTTGATGTCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGGAGCAATCACTCGTGGGGTCCAGCATTTGGGCAGTCTCAGACGCCAAATATGGCATTTGGAAGGAGGCTGAACTTGAATCGTGGGACAATGAACTCAGAGTAGGAAAGGTTGTTTTCCGAGATGACGGGAGCTCGGAAAAGCTTGGGACTGAATCCATTTCCTTATCTGAGTATGCTGAAATGAGTGATGGGGAAACTGATTCAAGTTCAGAACAATCTGACTCTTGTGATGATGAAGAAGAAGAGGGGTCACAAGGTTTAGGATTTCTAGAAAGCACTGCCCTGCAGAGGGGCATCCAGACAGAGACTGCCATTTTTGCCAAGTGGGAGAATCACACCCGTGGAATAGCTTCCAAGATGATGGCCAACATGGGTTACCGAGAAGGAATGGGTTTAGGGGCATCTGGACAGGGAATCGTGGACCCTCTCTCTGTGAAAGTCCTCCCACCAAAGCAATCTCTTGATCATGCCCTTGAGTCCCATGAAAACGAGGAGAACAAAGAAAGTAGGGGGAAGAAGCGGAGTAGAGGCGGTAAGAGAAAACGTGATAAGAAGTTTGCTGCTGCAGCTCGGGCTAAAAAAGATAAAGAAGAATCAAGACCAGATGTCTTCAGCCTCATCAATACCCAACTTGCAATGCATGGAGAAGCTTTGAATGGTGGATCAGCAAAGAAGCAGCAGAATAAAAGTTTAGGGGAGGGGAAGAAAGAAGACAGACGGGCTCTGGTTGCCTATGATGATGAAGTGAGGGAATTGAGAATTCGAGTTGAGAAGCTGGAAGAAATGGTGAACCGAAACAAGAAGGAGAAAGTAGTTTACGAGGCTGCCATGAGAAAATTGAATGAGACTCGCAAAGCTTTGGCAGAGGCCGAGGCAGCTCATGCATCTGCTTCAAAAGCAGTTGTGGGCAGAGAAAAAGAGAAGAGATGGCTCAAGTTTTGA | 1491 | 0.4614 | MAEEDEKALEEQLENQLEEQRDSLAVLKEALVSDPTNSELLSVHEELIWAIKDAEEGLFHLKRARLLREADSALHDHKYTAEDVKVEPLDPSDAEAEPLEEQSYHVGSKCRFRYTDGRWYNGVILGLEGLDSAKISFLSPTSENMLICKFFLQQRCRFGTNCRLSHGVDVHLSSLKQYNPTIWEQSLVGSSIWAVSDAKYGIWKEAELESWDNELRVGKVVFRDDGSSEKLGTESISLSEYAEMSDGETDSSSEQSDSCDDEEEEGSQGLGFLESTALQRGIQTETAIFAKWENHTRGIASKMMANMGYREGMGLGASGQGIVDPLSVKVLPPKQSLDHALESHENEENKESRGKKRSRGGKRKRDKKFAAAARAKKDKEESRPDVFSLINTQLAMHGEALNGGSAKKQQNKSLGEGKKEDRRALVAYDDEVRELRIRVEKLEEMVNRNKKEKVVYEAAMRKLNETRKALAEAEAAHASASKAVVGREKEKRWLKF* | 497 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 339 | 385 | - | - | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 475 | 496 | - | - | |
Vvi4g0674 | 496 | SMART | c3hfinal6 | 142 | 168 | IPR000571 | GO:0046872 | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 371 | 385 | - | - | |
Vvi4g0674 | 496 | ProSiteProfiles | G-patch domain profile. | 296 | 342 | IPR000467 | GO:0003676 | |
Vvi4g0674 | 496 | Coils | Coil | 425 | 483 | - | - | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 339 | 355 | - | - | |
Vvi4g0674 | 496 | ProSiteProfiles | Zinc finger C3H1-type profile. | 142 | 169 | IPR000571 | GO:0046872 | |
Vvi4g0674 | 496 | Coils | Coil | 3 | 30 | - | - | |
Vvi4g0674 | 496 | Pfam | G-patch domain | 296 | 338 | IPR000467 | GO:0003676 | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 400 | 421 | - | - | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 356 | 370 | - | - | |
Vvi4g0674 | 496 | SUPERFAMILY | CCCH zinc finger | 143 | 167 | IPR036855 | GO:0046872 | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 253 | 267 | - | - | |
Vvi4g0674 | 496 | Pfam | CCCH-type zinc finger | 147 | 167 | IPR041367 | - | |
Vvi4g0674 | 496 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 | 1 | 496 | - | - | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 237 | 252 | - | - | |
Vvi4g0674 | 496 | Gene3D | - | 104 | 180 | - | - | |
Vvi4g0674 | 496 | SMART | G-patch_5 | 294 | 340 | IPR000467 | GO:0003676 | |
Vvi4g0674 | 496 | MobiDBLite | consensus disorder prediction | 237 | 267 | - | - |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vvi4g0674 | G-patch | 1.3e-13 | CL0449 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0674 | - | - | vvi:100254356 | 869.381 |