Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0660 ATGAGTTCCTTTTCCATCACACGAAAAAAGACGCCTTTCCAGAAGCACAGAGAGGAGGAAGAGGCAAAGAAAAAAAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAATCAATCCTAATGAGAGAGTGAAGACAGAGTCTGAAGGTGAAAAGTCGAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTCATACCACCTCCTTTGGCAGCCAAGGGAAAAGAACCTGATAAGAAGAAGGAGGAGGAGAAGCCGAAGGAGAGAGAGAAGGGGAAGTCACGCAACATAGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGGGATCAATGGCGTGATGGACGCCATAATGATAGTTCTGCTCTGCCTAGCAGATTTGATGAGCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGGTGGATGAGAATTTCCTTTTGCGTACTTTTGGAAGATTTGGTCCTATCGCTAGTGTGAAAATAATGTGGCCTAGGACAGAAGAGGAACGGAGGCGACAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGACGGTCAGGCTGCTAAGGACGAAATGCAAGGGGTAGTTGTTTATGAGTATGAGTTGAAGATTGGATGGGGTAAGTCTGTTTCTCTTCCATCACAAGCACTACCTGCTCCCCCACCAGGTCACATGGCCATCAGGAGTAAGGAGGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTCACTCCAAATGTCCCTGATATAATGGTTTCTCCTCCTGAGGATGATCATCTCCATCATGTGATCGACACAATGGCTCTATACGTTCTGGATGGAGGATGTGCTTTTGAACAAGCCATAATGGAGAGAGGTCGAGGAAATCCTCTTTTTAACTTCTTGTTTGAGCTTGGATCGAAGGAACACACTTACTATGTTTGGAGGCTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGGTGGAGAACTGAGCCTTTCATCATGATAACTGGCAGTGGAAGATGGATGCCACCCCCTCTTCCTACGGTCAGAAGCCCAGAGCATGAGAAGGAGTCTGGTACCACATTTGCAGCAGGAAGAAGCAGGCGTGTGGAGCTGGAACGGACATTGACTGATCCACAGAGGGATGAATTTGAGGATATGTTGCGTGCTTTGACATTAGAAAGGAGTCAGATAAAGGAAGCTATGGGTTTTGCTTTAGATAATGCTGATGCAGCTGGAGAGATAGTTGAGGTTCTCACAGAATCTTTAACACTTAAAGAAACACCTATACCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCACAATAGCAGTGCTCCAGTAAAGAATGCATCTGCATACCGTACCAAATTTGAAGCAACCTTACCTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTGTAACGGGAAGGATTACTGCTGAGGCCCTTAAGGAACGAGTTATGAAGGTTCTTCAAGTCTGGGCAGACTGGTTCCTATTTTCAGATGCATATGTCAATGGATTGCGGGCTACTTTTCTTCGATCTGGGAACTCTGGAGTGACACCTTTTCATTCTATATGTGGTGATGCACCAGAAATAGAAAAGAAAACTAGCTCGGAAGATACTGGTGAAGGAGGCAAGTCCAATCAAGATGCTGCGCTAGCAATGGGCAAAGGAGCAGCAATGAAGGAACTATTGAGCCTTCCAATTGCTGAATTGGAAAGACGTTGCAGGCATAATGGGTTATCTCTTGTTGGTGGTAGAGAAATAATGGTTGCAAGATTGCTTAGTCTAGAAGAGGCTGAAAAACAAAGGGGATATGATTTAGATGATGATTTGAAATATGCACAGAGCCATTCAAACTCAGGTAGATACCCAAGTAGCAGGAAGGAAATTGGTGTTGAAACAGAGTCTGTTGGATTATCGGGATGGAATCGTTATGGTGAAGATGAGATACAGTCACAAGGAAAAGGGTCTGTACCTTTGGCCCCGACAATTCCCATACCACAGCCTGAGCTCAAAGCCTTTACAAATAAAGGGAAAACTGATCCTGTTTTGCCTGCCTCTAAGTGGGCCCGAGAGGATGATGACAGTGATGATGAACAAAAGAGAAGTGCTAGGGGTCTGGGGTTAAGCTACTCTTCTTCTGGAAGCGAGAATGCAGGTGATGGTCCTAGCAAGGCTGATGAGATGGAATTTGCAACTGAATCAAGCATCCCCTCTCAACCAGACAGTGGAATGATGAATGAAGAGCATAGACAAAAGTTGAGGCGTCTAGAGGTTGCTTTAATAGAATACCGTGAGTCTCTTGAAGAACGGGGGATCAAAAGCTCTGAGGAAATCGAGAGAAAAGTTGCAATCCATCGGAAACGGCTACAGTCCGAATATGGATTATCAGATAGTAATGAAGATGTCTCATGGAATAAGCGGTCATCTGCAGAGAGAAGGGACAGACGAGATGATTCTCGCGAGACTACAAGAAAGCGCCACCGCAGCCGGAGTCAAAGTGAGGATGGGGACCGGGAGAGGCACCGTGATAGATCTCATGATCCAGAAAGCGAAAAGGGAAGGGATCGAGAACGTGATCGTGAGAAGAGTGGAAGCAGAGAGAGGGAAGATCATGACAGGGATAGAGGTAGAGAGAGAGAGAGGGATAGGAGAAGACGGGTGAAATGA 2895 0.4535 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERVKTESEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQERDQWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVSPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTVRSPEHEKESGTTFAAGRSRRVELERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEKKTSSEDTGEGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYPSSRKEIGVETESVGLSGWNRYGEDEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDSRETTRKRHRSRSQSEDGDRERHRDRSHDPESEKGRDRERDREKSGSREREDHDRDRGRERERDRRRRVK* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0660 964 Pfam CID domain 451 579 IPR006569 -
Vvi4g0660 964 Gene3D - 97 271 IPR012677 -
Vvi4g0660 964 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Vvi4g0660 964 MobiDBLite consensus disorder prediction 781 795 - -
Vvi4g0660 964 Gene3D - 445 591 IPR008942 -
Vvi4g0660 964 SUPERFAMILY RNA-binding domain, RBD 180 276 IPR035979 GO:0003676
Vvi4g0660 964 MobiDBLite consensus disorder prediction 11 35 - -
Vvi4g0660 964 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Vvi4g0660 964 MobiDBLite consensus disorder prediction 880 957 - -
Vvi4g0660 964 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Vvi4g0660 964 Pfam cwf21 domain 824 868 IPR013170 -
Vvi4g0660 964 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Vvi4g0660 964 MobiDBLite consensus disorder prediction 725 826 - -
Vvi4g0660 964 Coils Coil 822 842 - -
Vvi4g0660 964 SMART rrm1_1 188 264 IPR000504 GO:0003723
Vvi4g0660 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 268 IPR000504 GO:0003723
Vvi4g0660 964 SUPERFAMILY ENTH/VHS domain 447 587 IPR008942 -
Vvi4g0660 964 Coils Coil 17 37 - -
Vvi4g0660 964 CDD cwf21_RRC1-like 821 870 IPR047491 -
Vvi4g0660 964 CDD RRM_SR140 186 269 IPR035009 -
Vvi4g0660 964 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Vvi4g0660 964 MobiDBLite consensus disorder prediction 761 779 - -
Vvi4g0660 964 SMART 558neu5 451 586 IPR006569 -
Vvi4g0660 964 MobiDBLite consensus disorder prediction 99 170 - -
Vvi4g0660 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 261 IPR000504 GO:0003723
Vvi4g0660 964 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Vvi4g0660 964 Coils Coil 449 469 - -
Vvi4g0660 964 MobiDBLite consensus disorder prediction 65 80 - -
Vvi4g0660 964 Gene3D - 821 872 - -
Vvi4g0660 964 SMART cwf21_2 821 870 IPR013170 -
Vvi4g0660 964 Pfam Surp module 335 386 IPR000061 GO:0003723|GO:0006396
Vvi4g0660 964 MobiDBLite consensus disorder prediction 862 964 - -
Vvi4g0660 964 MobiDBLite consensus disorder prediction 1 188 - -
Vvi4g0660 964 PANTHER RNA PROCESSING PROTEIN LD23810P 1 910 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0660 184 264 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.69e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0660 K12842 - vvi:100262865 1770.36