Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0653 ATGGCGCGCAACCATGGAAGATGCTGTAAGGTAGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGAATGAAGCTTATACAGCTGGAGACTTGGGAACTTCTGTTCAGAAATCCTTTTTCAGAATGGATGAGATGATGCGGGGACAGAGAGGGTGGAGGGAATTAGCTGTTCTAGGAGATAAAATAAACAAATTCACTGGCATGATAGAAGGTTTGATTTGGTCTCCAAGGAGCAGCAGCGATGGTAATGACCATGTTGATGATTGGGCATTTGAGGAGGGCCCTCATTCTGATTTCGCTGGACCAACTTCTGGGAGTACAGCCTGTGTCGCAATTATTAGAAATAACCAACTTGTTGTTGCTAATGCTGGTGATTCTCGTTGTGTAATTTCTAGGAAGGGTCAGGCTTACAATCTATCTAGAGACCACAAACCTGATCTCGAGGTCGAGAAAGAGCGAATTTTAAAAGCTGGTGGTTTTATCCATGCAGGCCGAGTCAATGGAAGTTTAAATCTTGCAAGAGCCATAGGTGATATGGAATTCAAGCAGAACAAATTTTTGCCTCCTGAAAAGCAAATTGTAACCGCCAATCCAGATATAAACACTGTTGAACTTTGCGATGATGATGATTTTATCGTACTGGCATGTGATGGCATATGGGATTGCATGTCAAGCCAGCAACTAGTAGATTTTATACAGGAGCAACTGATCTTGGAAAGCAAGCTTTCTGCAGTATGTGAACGAGTACTTGATAGGTGTTTAGCTCCATCAACAGCTGGTGGTGAAGGGTGTGACAACATGACCATGATCTTGGTGCAATTCAAGAAGCCCATCACGGCCACTCCATCAGGGGAGCAATCTTCATCATGTAACCAAGCTGATACTGAACCGAAACCAACAGAGTAA 918 0.4346 MARNHGRCCKVVAKFCAKYLHQQVLKNEAYTAGDLGTSVQKSFFRMDEMMRGQRGWRELAVLGDKINKFTGMIEGLIWSPRSSSDGNDHVDDWAFEEGPHSDFAGPTSGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEVEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPPEKQIVTANPDINTVELCDDDDFIVLACDGIWDCMSSQQLVDFIQEQLILESKLSAVCERVLDRCLAPSTAGGEGCDNMTMILVQFKKPITATPSGEQSSSCNQADTEPKPTE* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0653 305 PANTHER PROTEIN PHOSPHATASE 2C 11 277 IPR015655 GO:0004722|GO:0006470
Vvi4g0653 305 CDD PP2Cc 92 278 IPR001932 -
Vvi4g0653 305 SUPERFAMILY PP2C-like 10 279 IPR036457 -
Vvi4g0653 305 MobiDBLite consensus disorder prediction 283 305 - -
Vvi4g0653 305 Gene3D - 5 279 IPR036457 -
Vvi4g0653 305 ProSiteProfiles PPM-type phosphatase domain profile. 1 278 IPR001932 -
Vvi4g0653 305 SMART PP2C_4 1 276 IPR001932 -
Vvi4g0653 305 Pfam Protein phosphatase 2C 102 262 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0653 Vvi-Chr4 6710396 6724886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0653 6 305 PP2C-type Phosphatase Gene Family AT2G25070 74.000 6.52e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0653 K17499 - vvi:100261065 604.749