Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0652 ATGACTCGGGTGCTTCATCGTGTGCTGCTTCCAGGATTCAAGGACTCTGAGATTTTGGCTTTCATGAGTGGTTTAGAAGGTGGCGTCCATGGAAACTCGACAGTTACTAAACCGCTGCCGAATGACGGTGTGCCACCAATGGCCATGCCTGTTGGGATAAAGAGGAAGGCAGAAGTAGCCGGTGGTGATCAGGCATCTTCATCTAGCAAAAAGAAGAAAACAGAAAATAAATGGACCTGCCCACTCTGTCAAGTGAGTGCTACTTGTGAACGAGGTTTGCAAGATCACTTCCGGGGAAAGAAGCATGAGGCCAAGGAGGCATCACTTAAAAAAAGTGAAGAAATGAGCCAAAAGATTTGCAGACCTGATCCATTTCCCGATGGAGATGAGGGCAAATCACAGGTGAGAGAAAAGCAGAAGGATAAAAAATTTTGGTGCCCAATTTGTGAGATTAGCACCAATGACCAGGCGTTGATGGAAATGCATTGGAATGGAAAGAAGCACATGGCAAAACTCAGGAAAAAATCTGGAACTCTCATGGCCATATCCTCCCCTGATGATGCCCAACACATTGGAAAAACAACAGCCACAGGGGAAGATGCTTCACCAAGTAATGCTGCAAGGACAGAGGAAATGGAAGCCCAAGAGGATATGTGCAAAGGAGACGAGTTTCTACTGAACATAAGGCAGACAAATCTAAAATTCTGGTGCCAAACCTGTAAGATTGGAACCACTAGTGAAGACTTGATGAAAAAGCATCAAAATGGAAAGAAGCACATGGCGAAACTCAAGAAAAATTCTGGAACTCTCATGGCCATATCCTCCTTGCCTGATGATGCCCAAGAAGTTGGAGAAACAACAGCCACAGAGGAGGATGCTTCACCAAGTAATGCTGAAGGGAATGAGGAAATAGAAGCCCAAGAGGATATGACCGAAGAACAAGACAAGTTGCTAGTGAACAAAAAGCAGACAAATCTAAAATTCTGGTGTGAAACTTGTAAGATTGGAACCACCAGTGAAGACTTAATGAAAGAACATCAGAATGGAAAGAAGCACATGACCCTGCTAAGGAAAAATGGTGGAGCTCTCATCACCATATCCATCTTACCAGATAATGTTGAAAATGATGGAGAAACAACAACCAAGAAGAAAATGAATGATTCAACGGCCAATGCAGACAAAAACAAGGAAACAGAAGTAGATGATGAAATTAAAATGGAAGCAGGATGGCAACAATGA 1239 0.4334 MTRVLHRVLLPGFKDSEILAFMSGLEGGVHGNSTVTKPLPNDGVPPMAMPVGIKRKAEVAGGDQASSSSKKKKTENKWTCPLCQVSATCERGLQDHFRGKKHEAKEASLKKSEEMSQKICRPDPFPDGDEGKSQVREKQKDKKFWCPICEISTNDQALMEMHWNGKKHMAKLRKKSGTLMAISSPDDAQHIGKTTATGEDASPSNAARTEEMEAQEDMCKGDEFLLNIRQTNLKFWCQTCKIGTTSEDLMKKHQNGKKHMAKLKKNSGTLMAISSLPDDAQEVGETTATEEDASPSNAEGNEEIEAQEDMTEEQDKLLVNKKQTNLKFWCETCKIGTTSEDLMKEHQNGKKHMTLLRKNGGALITISILPDNVENDGETTTKKKMNDSTANADKNKETEVDDEIKMEAGWQQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0652 412 SUPERFAMILY beta-beta-alpha zinc fingers 60 110 IPR036236 -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 188 213 - -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 374 412 - -
Vvi4g0652 412 SMART ZnF_U1_5 75 109 IPR003604 GO:0003676|GO:0008270
Vvi4g0652 412 SMART ZnF_U1_5 325 359 IPR003604 GO:0003676|GO:0008270
Vvi4g0652 412 SMART ZnF_U1_5 232 266 IPR003604 GO:0003676|GO:0008270
Vvi4g0652 412 SMART ZnF_U1_5 141 175 IPR003604 GO:0003676|GO:0008270
Vvi4g0652 412 MobiDBLite consensus disorder prediction 279 311 - -
Vvi4g0652 412 Gene3D Classic Zinc Finger 128 176 - -
Vvi4g0652 412 Gene3D Classic Zinc Finger 303 359 - -
Vvi4g0652 412 Gene3D Classic Zinc Finger 210 267 - -
Vvi4g0652 412 SUPERFAMILY beta-beta-alpha zinc fingers 325 357 IPR036236 -
Vvi4g0652 412 PANTHER OS06G0651300 PROTEIN-RELATED 193 394 - -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 188 204 - -
Vvi4g0652 412 SUPERFAMILY beta-beta-alpha zinc fingers 231 265 IPR036236 -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 296 310 - -
Vvi4g0652 412 Pfam Zinc-finger of C2H2 type 144 168 - -
Vvi4g0652 412 Pfam Zinc-finger of C2H2 type 235 259 - -
Vvi4g0652 412 Pfam Zinc-finger of C2H2 type 328 352 - -
Vvi4g0652 412 Pfam Zinc-finger of C2H2 type 78 102 - -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 376 406 - -
Vvi4g0652 412 MobiDBLite consensus disorder prediction 100 136 - -
Vvi4g0652 412 SUPERFAMILY beta-beta-alpha zinc fingers 130 174 IPR036236 -
Vvi4g0652 412 Gene3D Classic Zinc Finger 63 118 - -
Vvi4g0652 412 SMART c2h2final6 328 352 IPR013087 -
Vvi4g0652 412 SMART c2h2final6 235 259 IPR013087 -
Vvi4g0652 412 SMART c2h2final6 78 102 IPR013087 -
Vvi4g0652 412 SMART c2h2final6 144 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0652 Vvi-Chr4 6691202 6702918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0652 76 303 C2H2 Transcription Factor Family AT2G19380 23.529 1.89e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0652 - - vvi:104879036 823.542