Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0641 ATGGCCGACCACCGCTCTCAAACCCTAGCCCCAGTGCCTCACCCCTCCCACTATGATCACGATTGCCCTTCCTTCTCTGACCTCTTCAACGGCGTTACTCACTCTGAGTTCCCCACCATTCAAAATGTTGGGTTTCAGGGACAATTTGGGATGTCCCATCAAGAAGTTTTGGCAAGTGTGACAGCTAAAGCTGCTCAAGCTCCGGTTCAGATGGATCAACCTGTGTGTATGCATTCTTCTACTGAATCGTCATCTGTTCCAAAATCTGAGATATCCATGCCAAATTCAACACCAGGTGTAGAAAACCCATTAGCATTACCCCAAGATAATGCCTCCATCAAACAAAGAGCGGACCAGAAAGACTTTTCTGATCATAAAACCCAGCTTGCTGATACTGTTGTTATGAACATCCCCAATGATGGGTATAACTGGAGGAAGTATGGTCAGAAACAAGTGAAGAGCACTGAAAGTTCTAGAAGCTATTACAGATGCACATATTCTGATTGTGATGCGAAGAAGAAGGTTCAACAATGTCACCAGTCTGGTTTTGTAACTGGAGTTATTTATAAGGGTTTTCATAACCATGATCCACCTCCAAAGATTAGATGCACTCAGCTAAGGAAGTCTGCAGCTGTTAGTCCTGTTGAAGGGAGTGATACTGTATATCCTACAGCACAAAAGCTCGGAAATTCAGATCTATCCAATTATAAGAGTGAACCTGGAAAAGCATCAGTAGCAATGCCTGAATTGGAGCGACAGAACTCCAGCAATTCTGATAGCAATACAGGTATTAAAGCTGAGGAGGAAATTGGTGATGTGGTAGAGCGAAAACGAAGGATGAAACCCCAAGAACCACTGGTGCTTCCATCAAGACGGAAACAGAGAAGTTCATGTAGTTCAAATGAGATTGTCAAAAAAGAAGTTGGGGAATGTGGGGATGAACAAAAACCTAAACAAAGGATGAAAGAAGGAGGTTTAGCATGTTCAGCTCCCCTCTTTAAAACTATTAAGGAGCCTAAAATTGTTGTCCATGCTGCTGGTGATGTGGGGATCTCAAGTGATGGCTACAGGTGGCGCAAGTATGGCCAAAAAATGGTGAAAGGGAATCCTCATCCCAGGAGCTATTACAGGTGCACATCTGCTGGTTGCCCGGTCCGGAAGCATGTGGAGAGGGATACAGATGACAAAACAACCATCATAGTAACATATGAGGGGAAACATGACCATGACAGGCCGGTACCTAAGAAGCGGCATAGTCCACGAACTGCTGCTTTTCTTATTGCGGCTGCTGCTGCTATGAACAACAACCAATGCAAGAAAACAGAAACTTTGGCAAATCAAAGATCTTCAAACCAGCAGTCAGCTGACATGGAACATGATTTAACATGTCAGAAGGCTTTGGAACTTGGAGGTGAGAAGGCATTGGAGTCAGCTCGAACTCTTTTGAGTATTGGAATTGAAATCAAGCCTTGTTGA 1476 0.4411 MADHRSQTLAPVPHPSHYDHDCPSFSDLFNGVTHSEFPTIQNVGFQGQFGMSHQEVLASVTAKAAQAPVQMDQPVCMHSSTESSSVPKSEISMPNSTPGVENPLALPQDNASIKQRADQKDFSDHKTQLADTVVMNIPNDGYNWRKYGQKQVKSTESSRSYYRCTYSDCDAKKKVQQCHQSGFVTGVIYKGFHNHDPPPKIRCTQLRKSAAVSPVEGSDTVYPTAQKLGNSDLSNYKSEPGKASVAMPELERQNSSNSDSNTGIKAEEEIGDVVERKRRMKPQEPLVLPSRRKQRSSCSSNEIVKKEVGECGDEQKPKQRMKEGGLACSAPLFKTIKEPKIVVHAAGDVGISSDGYRWRKYGQKMVKGNPHPRSYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDHDRPVPKKRHSPRTAAFLIAAAAAMNNNQCKKTETLANQRSSNQQSADMEHDLTCQKALELGGEKALESARTLLSIGIEIKPC* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0641 491 MobiDBLite consensus disorder prediction 222 238 - -
Vvi4g0641 491 Gene3D WRKY domain 124 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 Gene3D WRKY domain 337 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 MobiDBLite consensus disorder prediction 222 263 - -
Vvi4g0641 491 SMART WRKY_cls 138 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 MobiDBLite consensus disorder prediction 249 263 - -
Vvi4g0641 491 Pfam WRKY DNA -binding domain 354 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 FunFam WRKY transcription factor 338 413 - -
Vvi4g0641 491 MobiDBLite consensus disorder prediction 76 106 - -
Vvi4g0641 491 SUPERFAMILY WRKY DNA-binding domain 134 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 450 IPR044810 GO:0003700
Vvi4g0641 491 ProSiteProfiles WRKY domain profile. 133 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 SUPERFAMILY WRKY DNA-binding domain 348 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0641 491 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0641 Vvi-Chr4 6569931 6576264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0641 111 491 WRKY Transcription Factor Family AT4G30935 42.377 3.72e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0641 WRKY 2.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0641 - - vvi:100262898 985.326