Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0636 ATGAATCTTTTAGAACTTGGTGAGGATGCAAGTCTACAAACAGCACCACAAGAAGTGCAGAATAATCGTAGTGAATATGGAAAGCATTTTGATCTTAATTCTTTACCACCAGGGTATAGATTTAATCCCACCGATGCAGAGATAATAGTTTTCTACTTGAGGAAGAAGGTTGATCATCAACCATTGCCACCGAACAAGATCATAGAAGTCAATCTCTATGCTTATGATCCTGAGGAACTTGCAGGTTTCTTCCGTCTGGGAATGGTGAATGGTTCTATTTCACGCCAAGGGACAAGAAATATCGGAATGGGCAACGTCCCAATAGGTCAGTCGGAGGTGGATACTGGAAGGCCACCGGAGCTGATAAAGAGATCAAATTTGAGGATCGAACGAAGAACTGGTGTCAATGATATGAGGGTACGTATATATCAAGTCCCTTTTTCATTTAGTCTATATTGTATCTTAAGATGTTTCTTGTTTGTTGCAGTTGGATGA 495 0.404 MNLLELGEDASLQTAPQEVQNNRSEYGKHFDLNSLPPGYRFNPTDAEIIVFYLRKKVDHQPLPPNKIIEVNLYAYDPEELAGFFRLGMVNGSISRQGTRNIGMGNVPIGQSEVDTGRPPELIKRSNLRIERRTGVNDMRVRIYQVPFSFSLYCILRCFLFVAVG* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0636 164 Gene3D NAC domain 44 100 IPR036093 GO:0003677|GO:0006355
Vvi4g0636 164 PANTHER NAC TRANSCRIPTION FACTOR 56 35 83 - -
Vvi4g0636 164 SUPERFAMILY NAC domain 29 84 IPR036093 GO:0003677|GO:0006355
Vvi4g0636 164 ProSiteProfiles NAC domain profile. 35 164 IPR003441 GO:0003677|GO:0006355
Vvi4g0636 164 Pfam No apical meristem (NAM) protein 36 82 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0636 Vvi-Chr4 6519206 6520061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0636 35 80 NAC Transcription Factor Family AT1G61110 58.696 2.93e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi4g0636 NAM 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0636 - - vvi:104879057 170.629