Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0616 ATGGGGAAGCCCACTGGGAAGAAGAAGACTCCGGGGCCGTCGAAACCGGGCGACGCCAGCGCGAAGCACGGAAAAACGACGGCCTTTGATGAGGACACGGCTGTCTTCATCACAATGTCTCAGGAATTGAAAGAAGAAGGTAACAAGCTGTTTCAAAAGCGCGACCATGAAGGGGCGATGTTGAAGTATGAAAAAGCCCTAAAGTTGCTTCCCAAAAACCATATTGATATTGCCTATTTGAGGTCTAACATGGCCTCTTGCTATATGCTAATGGGCATTGGGGAGTACCCACGAGCAATAAACCAATGCAATTTGGCGATTGAGGTCTCCCCAAAATACAGTAAGGCGCTTTTGAAGCGTGCTAAGTGTTATGAGGCTCTGAATAGACTTGATTTAGCATTGAAGGATGTTAACAGTATTCTGAGTATTGAATCTAATAATCTTGCTGCGTTGGAGATCGCAGACAGGGTTAAAAAGGCCATAGAGGAAAAGGGTATCAAGGTAGATGATAAGGAAATTGTTATGGCTGCGGAGTATACCGAGTCACCTCCCTATAAGGCTGTAAAACAGAAGACTAAGAAGAAGAAGAGTAACAAAACTGAGGTGAAGAAACTGCTGGATAAGGCAGTTGTGAAACCGGTGGATAAGGCAGTTGTGAAACCGGTAGATAAGGCAGTTGTGGAGGAGAATGTTGGTGTTGTTAAGGAGAATGTTGATGCTGTTAAGGAGAATGTTGATGCTGTTAAGGAGAAGGCAGTGGCTCCAGAGACTGCTGAGGAAGAAGAAGTTGTTGTTTCAGAGATTGTGAAGGAAGAACAAGTGGTGACCGTGAGTAGGCCTGTGAAGTTGGTGTTCAATGAGGATATAAGGTGGGCACAGTTACCGGTTAATTGTAGTATTCGATTGGTGAGGGACATAGTTCAAGACCGGTTTCCAAGCTTGAAGGGTATTCTTGTAAAATATAGGGATCATGAAGGTGATTTGGTTACAATCACAACAAATGATGAGTTGAGATTTGCAGAAGCTTCAGGTGATCCACAGGGGTCTCTTAGATTGTATGTTGCAGAAGTTAGTCCAGATCATGAGCCGCTGTATGAAGGAATGGAGAATGAGGAGGAGGTGTACAATCATGATAGGAGAGGAATTCATGTTAAGGAGAATGGAAATGTGGAGAAAGGTGGAGACATGGAAAATGGGTTCTCGTGTATTGATGACTGGATAGTACAGTTTGCACGATTGTTCAAGAACTATGTTGGGTTCAATTCTGATTCATACTTGGATCTTCATGAGCTTGGGATGAAGCTGTACTCAGAGGCGATGGAGGATGCTGTTACAAGTGAAGAAGCCCAAGAACTTTTTGAAATTGCTGCTGACAAGTTTCAAGAGATGGCAGCTTTGGCCTTGTTCAATTGGGGAAATGTTCACATGTCCATGGCAAGAAAGAGGGTGTTCCTCACGGAAGATGGATCAAGGGAATCTATTATTGCTCAGATTAAAACTGCATATGAGTGGGCACAGAAAGAATATATCAAGGCAAGTTTGAGGTATGAAGAAGCTCTAAAAATCAAACCCGACTTCTATGAAGGTCATCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTGGGTGCAAGATTGATTTAGAGTCAGGGCCTTCCATGGAGGTCCTACAGCTGTATAACAAGGCTGAGGACAGCATGGAGAGGGGCATGCTGATGTGGGAGGAGATGGAGGAGCGGCGTCTGAATGGCCTCTCGAAATTGGATAAATATCAGGCCCAGTTGCAGAAAATGGGTTTGGATGCGCTATTCAAAGATATATCTGCCAGTGACGTTGCAGAGCAGGCTGCAAACATGAAGTCACAGATATACCTCTTGTGGGGTACATTGCTTTATGAGCGTTCAATTGTGGAATTCAAGTTGGGGCTACTGTCGTGGGAAGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCAACTGATATAGCTGTTATGATAAAGAACCATTGTTCCAATGGAGCTGCACTGGAAGGTTTGGGATTCGACATTAATGAGATTGTACAAGCATGGAATGAAATGTATGATGCTAAGAGGTGGCAGATTGGTGTTCCATCTTTTCGATTGGAACCATTGTTTCGTCGGCGGGTTCCAAAACTTCATCATATCTTGGAGCATATTTGA 2217 0.4393 MGKPTGKKKTPGPSKPGDASAKHGKTTAFDEDTAVFITMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDIAYLRSNMASCYMLMGIGEYPRAINQCNLAIEVSPKYSKALLKRAKCYEALNRLDLALKDVNSILSIESNNLAALEIADRVKKAIEEKGIKVDDKEIVMAAEYTESPPYKAVKQKTKKKKSNKTEVKKLLDKAVVKPVDKAVVKPVDKAVVEENVGVVKENVDAVKENVDAVKEKAVAPETAEEEEVVVSEIVKEEQVVTVSRPVKLVFNEDIRWAQLPVNCSIRLVRDIVQDRFPSLKGILVKYRDHEGDLVTITTNDELRFAEASGDPQGSLRLYVAEVSPDHEPLYEGMENEEEVYNHDRRGIHVKENGNVEKGGDMENGFSCIDDWIVQFARLFKNYVGFNSDSYLDLHELGMKLYSEAMEDAVTSEEAQELFEIAADKFQEMAALALFNWGNVHMSMARKRVFLTEDGSRESIIAQIKTAYEWAQKEYIKASLRYEEALKIKPDFYEGHLALGQQQFEQAKLSWYYAIGCKIDLESGPSMEVLQLYNKAEDSMERGMLMWEEMEERRLNGLSKLDKYQAQLQKMGLDALFKDISASDVAEQAANMKSQIYLLWGTLLYERSIVEFKLGLLSWEECLEVAVEKFELAGASPTDIAVMIKNHCSNGAALEGLGFDINEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRVPKLHHILEHI* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0616 738 CDD PB1 281 354 - -
Vvi4g0616 738 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0616 738 Pfam PB1 domain 279 355 IPR000270 GO:0005515
Vvi4g0616 738 SUPERFAMILY CAD & PB1 domains 277 368 - -
Vvi4g0616 738 Gene3D - 267 357 - -
Vvi4g0616 738 SMART PB1_new 278 357 IPR000270 GO:0005515
Vvi4g0616 738 PANTHER PROTEIN CLMP1 1 737 IPR044517 -
Vvi4g0616 738 ProSiteProfiles PB1 domain profile. 278 357 IPR000270 GO:0005515
Vvi4g0616 738 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Vvi4g0616 738 SUPERFAMILY TPR-like 420 542 IPR011990 GO:0005515
Vvi4g0616 738 SMART tpr_5 493 526 IPR019734 GO:0005515
Vvi4g0616 738 SMART tpr_5 78 113 IPR019734 GO:0005515
Vvi4g0616 738 SMART tpr_5 40 73 IPR019734 GO:0005515
Vvi4g0616 738 SMART tpr_5 114 147 IPR019734 GO:0005515
Vvi4g0616 738 SUPERFAMILY TPR-like 37 154 IPR011990 GO:0005515
Vvi4g0616 738 Gene3D Tetratricopeptide repeat domain 38 167 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0616 Vvi-Chr4 6154009 6156335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0616 28 147 Calmodulin-binding Proteins AT3G25230 29.457 3.20e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0616 - - vvi:100252640 1327.77