Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0609 ATGGGTAGTACTGGTGGTGATGAAGTAATGATTTCTGGGAGTGGTGAGGCTCAATGTTCCGAGGCCACTGTTGAGATAAAAATAAAAACACTGGATTCTCAAACATATACTTTGCGAGTGGATAAATGTATGCCAGTTCCTGCTTTAAAAGAACAAATTGCTAGTGTTACCGGTGTGTTATCCGAACAACAGCGCCTCATATGCCGTGGAAGGGTTTTGAAGGATGATCAACTCCTCTCAGCTTACCATGTGGAAGATGGTCACACATTGCATCTTGTTGTTAGACAACCATTTCCGCCATCATCAGAGAGCTTGCCTGATAATTCAGCCACAGATCCTGCATCAAATACTCTTCGTAATCAAGGTTTTCATGTAGGTTCTAGTGTGGTAGTTTTGTCCGAGCAAGGGGATGGAGTTCCAGATCTCAGTCGGATTGTCTCAGCTGTTCTCAGTTCTTTTGGAGTCAATAATGTTCGAAGTGGCAGTGAAGGGGCTGACCCTAGGGATCCTGTCCCAGAGAGGGGCTCAGGAACTCCTGGTTTAAGTGGCTTGAGAGACTCTAGCAGACAGCAACCTAACCAGGCTGCTACAATTGATCAGTCTAATCCTCTCAATGGTGCTTCTTTGCTTCCAAATGATGTTACCTTGGAGCAGCTGCAGCCACCGGTGATTCCTGATTCTTTGACAACTTTGTCTCAGTATTTGCGGAATATGAGACATGAATTTGGTGGCAGTGTCAGAGGCCATGGCAATAATTCTGCTGCTGGAATTCATGGTTGTGATGTACAAAACTCTGAGGCTACCTTGCAGTCAGATGTTACACAAGGAGGACTTCCAACACCTGCTTCCTTGGCAGAAGTGATACTTTCTACTAGACAAATACTCATTGAACAAGCTGCAGAGGACCTCTCACAACTCACAAGACAACTAGAGAATCATGCAAATGTGACTGATCCTTTAGCACGGAGGAGCATCCAATCCAATGCCTTGAGATTAGGAGCCATCTTGCGAAATTTAGGTGCTTTGCTGCTTGAGCTTGGTCGAACAACCATGACATTGCGAATGGGTCAAACACCGAATGATGCTGTGGTTAATGCTGGACCTGCACTCTTTATATCCACATCTGGTCCCAATCCTATAATGGTTCAGCCACTTCCTTTTCACCCGGGAACAAGTTTTGGGGCCATACCCATGGGAACTGTTCAACCTGGCTCTGGTTTCTCTAGTGGTACTCTTCGTTCTGGTTTTCTTCCAAGGAATATTGACATTAGAATTCGTACAGGTTCAATGATGCCCCCGTCTGTTATTAACCAAAGGGAACCTGCTGGTGGTCAGACATCCCAAGGGCAAACAAGCCCAGCACTTTCTGGTGGTGTTAATTCCATTCACCAACCTGCTGCGGGAGCCTCTAGGAGTTCATCTTCAACCAGGGAGGCTGAAGTACGGGTTGTGCCCATTAGGACAGTGGTCGCTGCAATACCTGCTGCTGCCAGGCACTCACCTTCTGATTCATCTCGCAGTTCAATGGGATTATTTTATCCAGTTCTAGCCAGAGTTCAACATGTAATGTCTGGAAATTATAATGGTGCAAGAGGTTCTCAAGCATCTGATGAACATCAACCTAGGGGTCTAGGCGCACAGCAGCAATCAGTTCCTGAATCTGCATCACAACAGAACATTGAATCTCAAGGTAGAGATGAGGGGGCTGCTGCAAATAAAGGAAGAAGATGGAAAGAGCCGGACAGATGA 1749 0.4608 MGSTGGDEVMISGSGEAQCSEATVEIKIKTLDSQTYTLRVDKCMPVPALKEQIASVTGVLSEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPFPPSSESLPDNSATDPASNTLRNQGFHVGSSVVVLSEQGDGVPDLSRIVSAVLSSFGVNNVRSGSEGADPRDPVPERGSGTPGLSGLRDSSRQQPNQAATIDQSNPLNGASLLPNDVTLEQLQPPVIPDSLTTLSQYLRNMRHEFGGSVRGHGNNSAAGIHGCDVQNSEATLQSDVTQGGLPTPASLAEVILSTRQILIEQAAEDLSQLTRQLENHANVTDPLARRSIQSNALRLGAILRNLGALLLELGRTTMTLRMGQTPNDAVVNAGPALFISTSGPNPIMVQPLPFHPGTSFGAIPMGTVQPGSGFSSGTLRSGFLPRNIDIRIRTGSMMPPSVINQREPAGGQTSQGQTSPALSGGVNSIHQPAAGASRSSSSTREAEVRVVPIRTVVAAIPAAARHSPSDSSRSSMGLFYPVLARVQHVMSGNYNGARGSQASDEHQPRGLGAQQQSVPESASQQNIESQGRDEGAAANKGRRWKEPDR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0609 582 MobiDBLite consensus disorder prediction 181 209 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 431 479 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 568 582 - -
Vvi4g0609 582 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vvi4g0609 582 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vvi4g0609 582 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 527 565 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 429 481 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 527 582 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 101 120 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 96 120 - -
Vvi4g0609 582 SUPERFAMILY Ubiquitin-like 12 111 IPR029071 -
Vvi4g0609 582 Coils Coil 296 316 - -
Vvi4g0609 582 CDD Ubl_ubiquitin_like 26 93 - -
Vvi4g0609 582 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 12 575 - -
Vvi4g0609 582 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vvi4g0609 582 SMART ubq_7 24 95 IPR000626 GO:0005515
Vvi4g0609 582 Gene3D - 17 119 - -
Vvi4g0609 582 MobiDBLite consensus disorder prediction 156 209 - -
Vvi4g0609 582 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vvi4g0609 582 FunFam Large proline-rich protein BAG6 16 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0609 Vvi-Chr4 6044941 6058044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0609 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 6.54e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0609 - K23390 vvi:100249152 1058.13