Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0605 ATGGGGGGCATGAATGGCAAACCTTCAATGTTGTTTACTACAAGATTTCATAAAGATCATATTGTTCAAAAAGAAAAAAATATTTCCTTCCATCAAAACGAAAAATCGAAGGGCCAAAACCATAAAAAAATTGATTGTCATGCTTCTCAGTGGAAAGATGTGCCTAGCAAGGTGATAGTGTCTTGTGATATGAAATGTGTACGGCCATCAGTTGATGGATTGGGTGGGAGAAAAAATGACGAGGATCAACCTGCAATGTATGGGAGAAAAAATGATGAGGATCAACTAGCAGATACTGCAGCCAAACGCTTTAATGGAAATTTGCAGGAAATTAACTGCTTGAAGGAGCAAGAGATGTCTAATATTTCTTCTGGATGTTCTGCCCCTGCTGTTACTCAGGCATCTATTGAAGTTAATAACATGGATTCTTGTACCGTTGATGCTGGGGATACTGGATGTGCCAATGATCTTGTAGTTGATGAAGCATCTGGAATTGAAAAATGTTGGTCATCTGATGATGCACTTGACAGTGAAAGAAGTGCTGAATTTCTTGGTTTTACATGTAAAACTAGCTTCATAAAAGAAGGATCTTCCAAAGCATTGGCTAATCAATCATCTCGAAGTTTAATTGATGAGCTTAAGTTCAGAGATTCCTTTAGATGGAAGAGAGTACGAAATGAATCCCATACTGGGCTTGCAATTCATGAAAAAAACAGTCATTCACCAAAAATAGAGAGGGGATTGAAAACTAGGAAGAGGAAAAAAACTATGAAAATGAAGATGCTAAATGCATCATTCCCTGCCTCAGGTTTTTCTTCAGGACATTATGAACATACCGAATGTGCTGGTAGTGCTGAATGGCGCTCTTTTTCATACAAAGACGTGGACACGCTTCTTCAATGTGAACTAGGAACATCTCATACATGTGGTGCTTGCACAATTGGACCTAGTTTCAAAAGGCGAAGGTCTACATTGTCTTCTGCCAAAAACTTCTCTCGTAAAAGGGATGTAGACAAAATTTATGCTGATAGAGAAGGGGAAGATGGTTATCAGGCACAATCAAAGGGAAAAACTGAGTTTCTTAGCATCCATGAGGTTTCTGGTGCCAAAAGGATTGGACCAGACCGGACTGCTGAAGCTTTTAGGCAGTTTTGTATGCAAGAACCAAGCCATACAAAAGCTGTGAAGTACAATTCAGTTGGTTGTGTAAAAGAGTCCTCTTGTCTGAAGCTGGATGTTTCTAATAGGAGAGAAAAACCTGTAGTATGTGGGAAATATGGTGTTATTTCAAATGGAAAATTGGCTATAGATGTACCAAAGCCAGCAAAAATATTTTCTCTTAGCAGGGTTCTTAAAACTGCCAGGAGATGTACACTCTCTGCAAATGACGAACCTAGATTAACTTCCATGAGACAGTTGAAGAAGGCAAGGCTCAGAGGAAGTAATGGGTGTGTTAATGAAATCTCCAATTTGATGAAAGAGAAAGAAAATGAAATTCAGAATGCAACCAGATGTGATGAAAGGAATCCTGATAATTCAATGGAAGAAGCTGAGAAGGCAGTCATCAGTGGAGATACAAGATGTGCTGATGAATTGCTCATGTCCAAGCAGGAGAAAGCGTATGGTAGCAAGAAAGATGACAGTTATCATAGCACTCGATTGAAGCGAAAATATAAGGAAATTCGCAAGCGCAGCCTTTATGAGCTAACTGGAAAAGGAAAGAGTCCCAGTTCTGGAAATGCTTTTGTGAAGATACCAAAACATGCACCACAAAAGAAAAGCGGATCTGTCGGGTTGGAGAATGCTGAAGATAGTAAGCATTCCATGAGTGAATCATATAAAGTTAATTCCAAAAAATCCATTAAAGAGCACAGGTTTGAGTCCTTTATTTCAGATACAGATGCATTCTGCTGTGTTTGTGGAAGCTCCAACAAAGATGAAATTAATTGCTTATTGGAGTGCAGTCGTTGCTTAATCAGAGTGCATCAGGCTTGCTATGGTGTTTCCAGAGTTCCCAAAGGTCGTTGGTATTGCAGACCATGCAGGACAAGTTCTAAAAATATTGTCTGTGTACTCTGTGGTTATGGAGGAGGGGCCATGACACGGGCACTTCGGACTCGCAATATAGTGAAAAGTCTTTTGAAAGTATGGAATATTGAAACAGAATCCTGGCCCAAGAGTTCTGTTCCTCCTGAAGCTTTGCAGGATAAACTAGGCACACTGGATTCCTCAAGATCTGGACTTGAAAATGAATCATTTCCTGTTTTAAGACCTCTAGATATCGAGCCATCTACTACCACTGCTTGGAACATGGATCTGCAGAACCGGTCAGATATTACAAAGAATTTGTCTTGTTCCCTTGGTAATTTAAAGATACATAACACCATAACAGCTGGAATACTTGACTCAACTGTCAAGCAGTGGGTTCATATGGTTTGTGGACTCTGGACACCTGGAACAAGATGCCCAAATGTTGACACTATGAGTGCTTTTGATGTATCTGGTGCTTCACGTCCTAGGGCAAATGTGATTTGCTCAATATGTAACCGACCTGGTGGCTCATGTATAAAGTGCAGGGTTCTGAATTGCTTGGTTCCTTTTCATCCTTGGTGTGCTCACCGGAAGGTCTTTACTTAG 2637 0.4012 MGGMNGKPSMLFTTRFHKDHIVQKEKNISFHQNEKSKGQNHKKIDCHASQWKDVPSKVIVSCDMKCVRPSVDGLGGRKNDEDQPAMYGRKNDEDQLADTAAKRFNGNLQEINCLKEQEMSNISSGCSAPAVTQASIEVNNMDSCTVDAGDTGCANDLVVDEASGIEKCWSSDDALDSERSAEFLGFTCKTSFIKEGSSKALANQSSRSLIDELKFRDSFRWKRVRNESHTGLAIHEKNSHSPKIERGLKTRKRKKTMKMKMLNASFPASGFSSGHYEHTECAGSAEWRSFSYKDVDTLLQCELGTSHTCGACTIGPSFKRRRSTLSSAKNFSRKRDVDKIYADREGEDGYQAQSKGKTEFLSIHEVSGAKRIGPDRTAEAFRQFCMQEPSHTKAVKYNSVGCVKESSCLKLDVSNRREKPVVCGKYGVISNGKLAIDVPKPAKIFSLSRVLKTARRCTLSANDEPRLTSMRQLKKARLRGSNGCVNEISNLMKEKENEIQNATRCDERNPDNSMEEAEKAVISGDTRCADELLMSKQEKAYGSKKDDSYHSTRLKRKYKEIRKRSLYELTGKGKSPSSGNAFVKIPKHAPQKKSGSVGLENAEDSKHSMSESYKVNSKKSIKEHRFESFISDTDAFCCVCGSSNKDEINCLLECSRCLIRVHQACYGVSRVPKGRWYCRPCRTSSKNIVCVLCGYGGGAMTRALRTRNIVKSLLKVWNIETESWPKSSVPPEALQDKLGTLDSSRSGLENESFPVLRPLDIEPSTTTAWNMDLQNRSDITKNLSCSLGNLKIHNTITAGILDSTVKQWVHMVCGLWTPGTRCPNVDTMSAFDVSGASRPRANVICSICNRPGGSCIKCRVLNCLVPFHPWCAHRKVFT* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0605 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 878 IPR013083 -
Vvi4g0605 878 Pfam PHD-finger 649 682 - -
Vvi4g0605 878 SMART PHD_3 844 878 IPR001965 -
Vvi4g0605 878 SMART PHD_3 636 682 IPR001965 -
Vvi4g0605 878 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 22 866 - -
Vvi4g0605 878 Pfam PHD-zinc-finger like domain 803 875 - -
Vvi4g0605 878 ProSiteProfiles Extended PHD (ePHD) domain profile. 782 878 IPR034732 -
Vvi4g0605 878 MobiDBLite consensus disorder prediction 570 611 - -
Vvi4g0605 878 Coils Coil 485 505 - -
Vvi4g0605 878 CDD ePHD 807 875 - -
Vvi4g0605 878 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 623 678 IPR002219 -
Vvi4g0605 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 689 IPR013083 -
Vvi4g0605 878 FunFam Histone-lysine N-methyltransferase ATX4 620 697 - -
Vvi4g0605 878 SUPERFAMILY FYVE/PHD zinc finger 625 688 IPR011011 -
Vvi4g0605 878 ProSiteProfiles Zinc finger PHD-type profile. 634 684 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0605 630 700 C2H2 Transcription Factor Family AT3G14740 39.744 1.54e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0605 - - vvi:100255892 1779.22