Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0600 ATGGCGTTTCACAACCAGCTCTCACAAGAAATGGCACTACAGCATTTCACAGAACAACATTTGGGGGAAAACGCATCGGTTTTACGAACTATACTGCCGGACCATCTCGCACAGTCGTCCCCGGAGGGTGCCGGAAAGGCACCCGAGAATCAGCAGCAGCCGGTGCAGCTCGGAACTGGACCGACGTGGCTGAACCACGCGATTCAGCTCCGGCAACAGAGCCAGTACAGCGACAACAATTTTCTCAACTTTCTGCAGCGGAACACGAACGACGTCGTCGCGGCCGGCGATGAGGTTAGCAACGATTCGATCATCGCCACGGCGATGTCGCACGAATCGGCTGATTTGGCGAATAATAATAGCAATAACAGTAACGTGAAAGTCAACAACAGTGGCAATGGTGCTGAGATTGCAGAGAGTGGTGATGTAGCCGTGAATTGGCAAAATGCAAGGCAGAAAGCGGAAATCTTGGCGCATCCGTTGTATGAGCAGTTGTTATCCTCGCATGTGGCGTGCTTGCGCATAGCGACGCCGGTGGATCAGTTGCCGAGGATCGATGCGCAGCTTGCGCAGTCGCAACATGTTGTTTCCAAGTATTCGGCTCTCGGACATGGTAATTCGCAGATGCTTGGTGACGAGAAGGAGCTTGATCAGTTCATGACACATTATGTTCTATTGCTTTGCTCCTTTAAAGAACAACTGCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCGTGCTGGGAGATCGAACAATCCTTGCAAAGCTTAACAGGAGTTTCACCAGGTGAAGGCACAGGTGCAACAATGTCTGACGACGAGGAAGACCAGATAGATAGTGATGCCAACTTGTTTGATGGAAGTCTGGAGGGTGCAGACAGCATGGGATTTGGTCCTCTTGTCCCTACAGAGAGTGAAAGGTCCTTGATGGAACGAGTAAGGCAAGAGCTGAAGCATGAACTGAAACAGGGGTACAAGGAGAAAATTGTGGACATAAGGGAAGAAATTTTGCGCAAAAGAAGAGCAGGAAAACTTCCTGGTGACACTACTTCTGTCTTAAAAGCTTGGTGGCAATCACATTCTAAGTGGCCATACCCTACAGAGGAGGACAAGGCAAAGTTGGTACAAGAAACAGGCTTGCAACTAAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAGAGAAACTGGCACAGTAACCCTTCTACTTCCACTGTTTTGAAGAGCAAACGCAAAAGGTGA 1248 0.4904 MAFHNQLSQEMALQHFTEQHLGENASVLRTILPDHLAQSSPEGAGKAPENQQQPVQLGTGPTWLNHAIQLRQQSQYSDNNFLNFLQRNTNDVVAAGDEVSNDSIIATAMSHESADLANNNSNNSNVKVNNSGNGAEIAESGDVAVNWQNARQKAEILAHPLYEQLLSSHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALGHGNSQMLGDEKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDANLFDGSLEGADSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0600 415 Pfam KNOX1 domain 153 193 IPR005540 GO:0003677|GO:0005634
Vvi4g0600 415 Gene3D - 337 409 - -
Vvi4g0600 415 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Vvi4g0600 415 SMART KNOX1_2 150 194 IPR005540 GO:0003677|GO:0005634
Vvi4g0600 415 MobiDBLite consensus disorder prediction 44 59 - -
Vvi4g0600 415 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Vvi4g0600 415 Pfam KNOX2 domain 210 260 IPR005541 GO:0003677|GO:0005634
Vvi4g0600 415 ProSiteProfiles ELK domain profile. 318 338 IPR005539 GO:0003677
Vvi4g0600 415 SMART HOX_1 340 405 IPR001356 GO:0003677
Vvi4g0600 415 SUPERFAMILY Homeodomain-like 340 403 IPR009057 -
Vvi4g0600 415 SMART KNOX2_2 206 261 IPR005541 GO:0003677|GO:0005634
Vvi4g0600 415 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 400 - -
Vvi4g0600 415 Pfam ELK domain 318 339 IPR005539 GO:0003677
Vvi4g0600 415 CDD homeodomain 341 402 IPR001356 GO:0003677
Vvi4g0600 415 FunFam homeobox protein knotted-1-like 3 isoform X1 339 400 - -
Vvi4g0600 415 MobiDBLite consensus disorder prediction 37 59 - -
Vvi4g0600 415 SMART ELK_2 318 339 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0600 Vvi-Chr4 5879538 5887882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0600 1 415 Homeobox Transcription Factor Family AT5G25220 64.381 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi4g0600 KNOX2 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0600 - - vvi:100254363 818.92