Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0595 ATGAAGTTTTTTCTTCTGATTCTGCCTCTTCTTCAGTCCATTTGGAGTTTTCACTTCTCTATTGTTGAGGCCATCTCAGACCCTCCTCTTTCCTCTATATCTGCTCCTCTTTCTTCACCACCAATTGGGGCCACTTCACCAATCTCTTCATCAATGGCTGCCTTCTCTCCAGCTATTCAAGAGGGAAGTGAAGAAAATCAGAAGGATTCTCACAAGAAAACGTTTATAGCACTCACTGTTGCTTCTGCTGCACTGGGTGTAACCATATTGATTCTGTTGTCTCTGTGGATTCATAAGAAGTGCTCCCAAAAATCCCACAAGAGCAATGCTCAGAGCTCAGATGCAGAGAAAGCCCTCACTTTAGGTCCATTGTTGGCTAAATTCAACACCATGAAAGTGATTGGGAGAAAGGGTTCTGTCTCTTGTATTGATTATAAGGTACTAGAAACTGCAACAAACAATTTTCAGGAAAGTAATATCCTGGGTGAGGGCGGGTTTGGTTGCGTCTACAAGGCGCGGTTGGATGATAACTCCCATGTGGCTGTGAAGAAGATAGATGGTAGAGGCCAGGATGCTGAGAGAGAATTTGAGAATGAGGTGGATTTGTTGACTAAAATTCAGCACCCAAATATAATTTCTCTCCTGGGTTACAGCAGTCATGAGGAGTCAAAGTTTCTTGTCTATGAGCTGATGCAGAATGGATCTCTGGAAACTGAATTGCACGGACCTTCTCATGGATCATCTCTAACTTGGCATATTCGAATGAAAATCGCTCTGGATGCAGCAAGAGGATTAGAGTATCTACATGAGCACTGCAACCCACCAGTCATCCATAGAGATCTTAAATCATCTAATATTCTTCTGGATTCAAACTTCAATGCCAAGCTTTCGGATTTTGGTCTAGCTGTAATTGATGGGCCTCAAAACAAGAACAACTTGAAGCTTTCAGGCACCCTGGGTTATCTAGCTCCTGAGTATCTTTTAGATGGTAAACTGACTGATAAGAGTGATGTGTATGCATTTGGAGTGGTGCTTCTAGAGCTACTACTGGGAAGAAAGCCTGTGGAAAAACTGGCACCAGCTCAATGCCAGTCCATTGTCACATGGGCCATGCCACAGCTGACTGACAGATCAAAGCTCCCAGGCATCGTTGACCCTGTGGTCAGAGACACGATGGATCTAAAGCATTTATACCAAGTTGCTGCTGTAGCTGTGCTATGTGTGCAACCAGAACCAAGTTACCGGCCATTGATAACAGATGTTCTGCACTCCCTCATCCCACTCGTTCCAGTTGAGTTGGGAGGGATGCTAAAAGTTACCCAGCAAGCGCCGCCTATCAACACCACTGCACCTTCTGCTGGAGGTTGA 1368 0.4466 MKFFLLILPLLQSIWSFHFSIVEAISDPPLSSISAPLSSPPIGATSPISSSMAAFSPAIQEGSEENQKDSHKKTFIALTVASAALGVTILILLSLWIHKKCSQKSHKSNAQSSDAEKALTLGPLLAKFNTMKVIGRKGSVSCIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKIDGRGQDAEREFENEVDLLTKIQHPNIISLLGYSSHEESKFLVYELMQNGSLETELHGPSHGSSLTWHIRMKIALDAARGLEYLHEHCNPPVIHRDLKSSNILLDSNFNAKLSDFGLAVIDGPQNKNNLKLSGTLGYLAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPGIVDPVVRDTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGMLKVTQQAPPINTTAPSAGG* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0595 455 CDD STKc_IRAK 161 428 - -
Vvi4g0595 455 ProSiteProfiles Protein kinase domain profile. 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0595 455 PANTHER OS01G0750732 PROTEIN 25 428 - -
Vvi4g0595 455 SUPERFAMILY Protein kinase-like (PK-like) 136 425 IPR011009 -
Vvi4g0595 455 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Vvi4g0595 455 FunFam probable receptor-like protein kinase At1g80640 231 430 - -
Vvi4g0595 455 Gene3D Phosphorylase Kinase; domain 1 120 230 - -
Vvi4g0595 455 Pfam Protein kinase domain 155 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0595 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vvi4g0595 455 FunFam Protein kinase superfamily protein 122 230 - -
Vvi4g0595 455 Gene3D Transferase(Phosphotransferase) domain 1 231 430 - -
Vvi4g0595 455 SMART serkin_6 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0595 Vvi-Chr4 5740606 5743885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0595 7 371 Receptor kinase-like Gene Family AT1G80640 49.185 9.60e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vvi4g0595 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0595 - - vvi:100264651 881.322