Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0590 ATGAACAAAAAAGAAGATTTGAAGACCCAAAAAAACTGTGATGGGACCCATTTGCCAGAAGGGCCAAGAAAAAAGAGTCCCCTCCAGTGCTCCTGTGCCTGTCAACAAGCCCGACTACATAAACCCCTCTACCCCCCTCCATCACTTGGCCATCACTCTCCTTTGCATCATTCTCTCTTTCAGGCATTTTCACAAACACTCCCCGCACGAAACGTTTTCTTTCCTTTCTTTAATAACTCTAACATGGCCAGACCTCAGCAGCGATATCGAGGCGTCCGACAGAGGCATTGGGGCAGTTGGGTCTCTGAAATTCGCCACCCACTTCTGAAGACTAGAATTTGGCTGGGCACATTCGAAACGGCGGAGGACGCTGCTCGGGCCTATGACGAGGCGGCGAGGCTCATGTGTGGTCCGAGGGCGAGAACCAACTTCCCTTACAATCCCAACGCCTCCCAGTCGTCGTCTTCCAAGCTTCTTTCAGCTACTTTAACTGCCAAGCTGCATAGGTGTTACATGGCCTCACTTCAGTTAACCAAACAATCCCTGCATGAGCCTCAAAAGCCACCGACTTCCCATGTCGCCACAACCACCAGCATTGCGGGGAAAGTTGGGGAATCAGGCCAGTGGTCGCCGGAGAAAAGACCGGTGACAGTGCAGCAGCCTGAGGCCAATTGGGTTGTGAAGAAAGTTCAAGTGGACAGCAACACCCAGCAGTTCAAGCCTCTTGAAGATGATCACATACAGCAAATGATTGAGGAGTTGCTTGACTATGGTTCCATCGAGCTCTGCTCAGGCTCCATAATGTAG 807 0.5118 MNKKEDLKTQKNCDGTHLPEGPRKKSPLQCSCACQQARLHKPLYPPPSLGHHSPLHHSLFQAFSQTLPARNVFFPFFNNSNMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQLTKQSLHEPQKPPTSHVATTTSIAGKVGESGQWSPEKRPVTVQQPEANWVVKKVQVDSNTQQFKPLEDDHIQQMIEELLDYGSIELCSGSIM* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0590 268 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g0590 268 Gene3D AP2/ERF domain 87 146 IPR036955 GO:0003700|GO:0006355
Vvi4g0590 268 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Vvi4g0590 268 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Vvi4g0590 268 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Vvi4g0590 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 80 191 - -
Vvi4g0590 268 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0590 268 FunFam Ethylene-responsive transcription factor 2 87 146 - -
Vvi4g0590 268 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Vvi4g0590 268 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Vvi4g0590 268 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Vvi4g0590 268 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0590 Vvi-Chr4 5696955 5697876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0590 82 264 AP2-EREBP Transcription Factor Family AT5G25190 68.306 1.00e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi4g0590 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0590 - - vvi:100252609 362.459