Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0584 ATGGAACAACTAAGGAAGGAGCCATGTCCCTCTGAGACCTCAACCATCATCATCTCTACACCAGAGGCTGCTTCATGTCCAGATAAGCCATCCCAAAGCCCAAAAGAGATCAATCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCATGAAAAAAAGACAAAGGTAGATCTCTTATTTAATCTGGAGCTCCATAGTAAGGATGCTGCTGATCATGGATTCAATACAGAACTCAATCTTATTGATTGCTTGAACACGGATTCATCTCAAACATCCTCAGAAATTCCCCAGCCTGCTGATGCTGAACCACGAGTTTTCTCATGCAACTATTGTCAAAGAAAATTCTATAGTTCACAGGCACTAGGGGGACACCAAAACGCCCATAAGAGGGAGAGGACCCTAGCCAAGAGAGGACAAAGGTTAGGTGCACCGATGGTTGCTGCAGCCACAGCTTTTGGGCATCCTTACTTCCATCATCAGCATTATTCTAGCATGGCATCTCTTCCTCTCCATGGTGCTTACAATAGATCACTTGGGATTCAGGTTCACTCGATGATCCATAAGCCTTCTCTCACAACACCTTCTTCTGGGTCTGGAAATTTGTATGGGCATCGCAGCTGGTCAAGACCACCTATTGACCAACAACCTGCAGTAGGAAGACTAGCAGTGGAGAATTGTCATGAAGGTGTAACAGCAGGACCATTGTCCCGAGGCGGCATTGGTAGGTTTGACACAGTAAGGATGATGATCAATTCACAGGCTAATGAGGGGATTGGTGGTTTTTGCTGGACAGGTGGGGGTCGCCTGAAGACTAATCAGGATGAGTTGCAGAAACTTGACTTGTCTCTCAAGCTCTAA 861 0.4541 MEQLRKEPCPSETSTIIISTPEAASCPDKPSQSPKEINLEEEEEEEEEEDHEKKTKVDLLFNLELHSKDAADHGFNTELNLIDCLNTDSSQTSSEIPQPADAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGAPMVAAATAFGHPYFHHQHYSSMASLPLHGAYNRSLGIQVHSMIHKPSLTTPSSGSGNLYGHRSWSRPPIDQQPAVGRLAVENCHEGVTAGPLSRGGIGRFDTVRMMINSQANEGIGGFCWTGGGRLKTNQDELQKLDLSLKL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0584 286 MobiDBLite consensus disorder prediction 1 54 - -
Vvi4g0584 286 Coils Coil 37 57 - -
Vvi4g0584 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 286 IPR044246 GO:0009788
Vvi4g0584 286 Gene3D Classic Zinc Finger 86 149 - -
Vvi4g0584 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Vvi4g0584 286 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Vvi4g0584 286 MobiDBLite consensus disorder prediction 8 27 - -
Vvi4g0584 286 FunFam Zinc finger protein 2 85 155 - -
Vvi4g0584 286 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0584 Vvi-Chr4 5630158 5631018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0584 11 286 C2H2 Transcription Factor Family AT5G10970 44.056 1.44e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi4g0584 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0584 - - vvi:100245739 572.778